Analysis of interatomic Contacts of Structural Units in PDB entry:
3GIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GIQ entry

There are 2 chains in PDB entry 3GIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ALA 478
B
 GLU 5ALA 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 76Right-handed alpha
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
109 116Right-handed 310
Helix 4
4
A
123 134Right-handed alpha
Helix 5
5
A
146 154Right-handed alpha
Helix 6
6
A
162 180Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
197 211Right-handed alpha
Helix 9
9
A
225 241Right-handed alpha
Helix 10
10
A
253 258Right-handed 310
Helix 11
11
A
259 273Right-handed alpha
Helix 12
12
A
292 296Right-handed 310
Helix 13
13
A
310 314Right-handed 310
Helix 14
14
A
317 326Right-handed alpha
Helix 15
15
A
328 337Right-handed alpha
Helix 16
16
A
347 357Right-handed alpha
Helix 17
17
A
375 387Right-handed alpha
Helix 18
18
A
396 405Right-handed alpha
Helix 19
19
A
405 413Right-handed alpha
Helix 20
20
B
71 76Right-handed alpha
Helix 21
21
B
79 84Right-handed alpha
Helix 22
22
B
109 116Right-handed 310
Helix 23
23
B
123 134Right-handed alpha
Helix 24
24
B
146 154Right-handed alpha
Helix 25
25
B
162 180Right-handed alpha
Helix 26
26
B
192 196Right-handed 310
Helix 27
27
B
197 211Right-handed alpha
Helix 28
28
B
225 241Right-handed alpha
Helix 29
29
B
253 258Right-handed 310
Helix 30
30
B
259 274Right-handed alpha
Helix 31
31
B
292 296Right-handed 310
Helix 32
32
B
310 314Right-handed 310
Helix 33
33
B
317 326Right-handed alpha
Helix 34
34
B
328 337Right-handed alpha
Helix 35
35
B
347 357Right-handed alpha
Helix 36
36
B
375 387Right-handed alpha
Helix 37
37
B
396 405Right-handed alpha
Helix 38
38
B
405 413Right-handed alpha
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There are 8 sheets in PDB entry 3GIQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
7 12anti-parallel
Strand 4
A
47 52parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
15 16anti-parallel
Strand 3
A
57 60parallel
Strand 4
A
428 431anti-parallel
Strand 5
A
452 457anti-parallel
Strand 6
A
460 463anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
87 92parallel
Strand 3
A
139 145parallel
Strand 4
A
183 187parallel
Strand 5
A
214 218parallel
Strand 6
A
243 246parallel
Strand 7
A
277 281parallel
Strand 8
A
360 362parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
303 307anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
7 12anti-parallel
Strand 4
B
47 52parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
15 16anti-parallel
Strand 3
B
57 60parallel
Strand 4
B
428 431anti-parallel
Strand 5
B
452 457anti-parallel
Strand 6
B
460 463anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
87 92parallel
Strand 3
B
139 145parallel
Strand 4
B
183 187parallel
Strand 5
B
214 218parallel
Strand 6
B
243 246parallel
Strand 7
B
277 281parallel
Strand 8
B
360 362parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 290first strand
Strand 2
B
339 344anti-parallel
Strand 3
B
303 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il