Analysis of interatomic Contacts of Structural Units in PDB entry:
3GIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GIR entry

There is 1 chain in PDB entry 3GIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11LYS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3GIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 24Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
127 139Right-handed alpha
Helix 5
5
A
160 168Right-handed alpha
Helix 6
6
A
205 218Right-handed alpha
Helix 7
7
A
226 237Right-handed alpha
Helix 8
8
A
257 261Right-handed 310
Helix 9
9
A
262 269Right-handed alpha
Helix 10
10
A
273 284Right-handed alpha
Helix 11
11
A
336 340Right-handed 310
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There are 4 sheets in PDB entry 3GIR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
34 39parallel
Strand 3
A
27 31anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
188 190anti-parallel
Strand 3
A
199 204anti-parallel
Strand 4
A
152 157anti-parallel
Strand 5
A
55 59anti-parallel
Strand 6
A
222 224parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
105 115anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
145 148anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 294first strand
Strand 2
A
328 335anti-parallel
Strand 3
A
313 323anti-parallel
Strand 4
A
305 307anti-parallel
Strand 5
A
345 350anti-parallel
Strand 6
A
353 360anti-parallel
Strand 7
A
288 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il