Analysis of interatomic Contacts of Structural Units in PDB entry:
3GIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GIT entry

There are 6 chains in PDB entry 3GIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 316HIS 737
B
ILE 316GLY 736
C
ILE 316GLY 736
D
ILE 316HIS 737
E
ILE 316GLY 736
F
ILE 316GLY 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are129 helices in PDB entry 3GIT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
325 329Right-handed 310
Helix 2
2
A
334 336Right-handed 310
Helix 3
3
A
357 361Right-handed 310
Helix 4
4
A
396 398Right-handed 310
Helix 5
5
A
399 413Right-handed alpha
Helix 6
6
A
432 438Right-handed alpha
Helix 7
7
A
441 456Right-handed alpha
Helix 8
8
A
470 493Right-handed alpha
Helix 9
9
A
508 512Right-handed 310
Helix 10
10
A
532 543Right-handed alpha
Helix 11
11
A
565 575Right-handed alpha
Helix 12
12
A
606 609Right-handed 310
Helix 13
13
A
627 636Right-handed alpha
Helix 14
14
A
648 654Right-handed 310
Helix 15
15
A
658 665Right-handed 310
Helix 16
16
A
671 689Right-handed alpha
Helix 17
17
A
694 699Right-handed alpha
Helix 18
18
A
707 719Right-handed alpha
Helix 19
19
A
720 725Right-handed 310
Helix 20
20
A
727 732Right-handed 310
Helix 21
21
B
325 329Right-handed 310
Helix 22
22
B
334 336Right-handed 310
Helix 23
23
B
357 361Right-handed 310
Helix 24
24
B
372 376Right-handed 310
Helix 25
25
B
396 398Right-handed 310
Helix 26
26
B
399 413Right-handed alpha
Helix 27
27
B
432 438Right-handed alpha
Helix 28
28
B
441 456Right-handed alpha
Helix 29
29
B
470 493Right-handed alpha
Helix 30
30
B
508 512Right-handed 310
Helix 31
31
B
532 543Right-handed alpha
Helix 32
32
B
565 575Right-handed alpha
Helix 33
33
B
606 609Right-handed 310
Helix 34
34
B
627 636Right-handed alpha
Helix 35
35
B
648 654Right-handed 310
Helix 36
36
B
658 665Right-handed 310
Helix 37
37
B
671 678Right-handed alpha
Helix 38
38
B
678 689Right-handed alpha
Helix 39
39
B
694 699Right-handed alpha
Helix 40
40
B
707 718Right-handed alpha
Helix 41
41
B
720 725Right-handed 310
Helix 42
42
B
727 732Right-handed 310
Helix 43
43
C
325 329Right-handed 310
Helix 44
44
C
334 336Right-handed 310
Helix 45
45
C
357 361Right-handed 310
Helix 46
46
C
372 376Right-handed 310
Helix 47
47
C
396 398Right-handed 310
Helix 48
48
C
399 413Right-handed alpha
Helix 49
49
C
432 438Right-handed alpha
Helix 50
50
C
441 456Right-handed alpha
Helix 51
51
C
470 493Right-handed alpha
Helix 52
52
C
508 512Right-handed 310
Helix 53
53
C
532 543Right-handed alpha
Helix 54
54
C
565 575Right-handed alpha
Helix 55
55
C
606 609Right-handed 310
Helix 56
56
C
627 636Right-handed alpha
Helix 57
57
C
648 654Right-handed 310
Helix 58
58
C
658 665Right-handed 310
Helix 59
59
C
671 678Right-handed alpha
Helix 60
60
C
678 689Right-handed alpha
Helix 61
61
C
694 699Right-handed alpha
Helix 62
62
C
707 718Right-handed alpha
Helix 63
63
C
720 725Right-handed 310
Helix 64
64
C
727 732Right-handed 310
Helix 65
65
D
325 329Right-handed 310
Helix 66
66
D
334 336Right-handed 310
Helix 67
67
D
357 361Right-handed 310
Helix 68
68
D
372 376Right-handed 310
Helix 69
69
D
396 398Right-handed 310
Helix 70
70
D
399 413Right-handed alpha
Helix 71
71
D
432 438Right-handed alpha
Helix 72
72
D
441 456Right-handed alpha
Helix 73
73
D
470 492Right-handed alpha
Helix 74
74
D
508 512Right-handed 310
Helix 75
75
D
532 543Right-handed alpha
Helix 76
76
D
565 575Right-handed alpha
Helix 77
77
D
606 609Right-handed 310
Helix 78
78
D
627 636Right-handed alpha
Helix 79
79
D
648 654Right-handed 310
Helix 80
80
D
658 665Right-handed 310
Helix 81
81
D
671 689Right-handed alpha
Helix 82
82
D
694 699Right-handed alpha
Helix 83
83
D
707 719Right-handed alpha
Helix 84
84
D
720 725Right-handed 310
Helix 85
85
D
727 732Right-handed 310
Helix 86
86
E
325 329Right-handed 310
Helix 87
87
E
334 336Right-handed 310
Helix 88
88
E
357 361Right-handed 310
Helix 89
89
E
372 376Right-handed 310
Helix 90
90
E
396 398Right-handed 310
Helix 91
91
E
399 413Right-handed alpha
Helix 92
92
E
432 438Right-handed alpha
Helix 93
93
E
441 456Right-handed alpha
Helix 94
94
E
470 492Right-handed alpha
Helix 95
95
E
508 512Right-handed 310
Helix 96
96
E
532 543Right-handed alpha
Helix 97
97
E
565 575Right-handed alpha
Helix 98
98
E
606 609Right-handed 310
Helix 99
99
E
627 636Right-handed alpha
Helix 100
100
E
648 654Right-handed 310
Helix 101
101
E
658 665Right-handed 310
Helix 102
102
E
671 689Right-handed alpha
Helix 103
103
E
694 699Right-handed alpha
Helix 104
104
E
707 719Right-handed alpha
Helix 105
105
E
720 725Right-handed 310
Helix 106
106
E
727 732Right-handed 310
Helix 107
107
F
325 329Right-handed 310
Helix 108
108
F
334 336Right-handed 310
Helix 109
109
F
357 361Right-handed 310
Helix 110
110
F
372 376Right-handed 310
Helix 111
111
F
396 398Right-handed 310
Helix 112
112
F
399 405Right-handed alpha
Helix 113
113
F
406 413Right-handed alpha
Helix 114
114
F
432 438Right-handed alpha
Helix 115
115
F
441 456Right-handed alpha
Helix 116
116
F
470 492Right-handed alpha
Helix 117
117
F
496 500Right-handed 310
Helix 118
118
F
508 512Right-handed 310
Helix 119
119
F
532 543Right-handed alpha
Helix 120
120
F
565 575Right-handed alpha
Helix 121
121
F
606 609Right-handed 310
Helix 122
122
F
627 636Right-handed alpha
Helix 123
123
F
648 654Right-handed 310
Helix 124
124
F
658 665Right-handed 310
Helix 125
125
F
671 689Right-handed alpha
Helix 126
126
F
694 699Right-handed alpha
Helix 127
127
F
707 718Right-handed alpha
Helix 128
128
F
720 725Right-handed 310
Helix 129
129
F
727 732Right-handed 310
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There are 30 sheets in PDB entry 3GIT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
380 382first strand
Strand 2
A
338 343parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
417 422anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
349 355first strand
Strand 2
A
384 391parallel
Strand 3
A
462 468anti-parallel
Strand 4
A
366 369parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 520first strand
Strand 2
A
502 506anti-parallel
Strand 3
A
548 552anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
556 558first strand
Strand 2
A
563 564anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
644 647first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
610 615anti-parallel
Strand 4
A
667 669parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
338 343first strand
Strand 2
B
425 431anti-parallel
Strand 3
B
417 422anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
349 355first strand
Strand 2
B
384 391parallel
Strand 3
B
462 468anti-parallel
Strand 4
B
366 369parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
518 520first strand
Strand 2
B
502 506anti-parallel
Strand 3
B
548 552anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
556 558first strand
Strand 2
B
563 564anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
644 647first strand
Strand 2
B
600 605anti-parallel
Strand 3
B
610 615anti-parallel
Strand 4
B
667 669parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
380 381first strand
Strand 2
C
338 343parallel
Strand 3
C
425 431anti-parallel
Strand 4
C
417 422anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
349 355first strand
Strand 2
C
384 391parallel
Strand 3
C
462 468anti-parallel
Strand 4
C
366 369parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
518 520first strand
Strand 2
C
502 506anti-parallel
Strand 3
C
548 552anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
556 558first strand
Strand 2
C
563 564anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
644 647first strand
Strand 2
C
600 605anti-parallel
Strand 3
C
610 615anti-parallel
Strand 4
C
667 669parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
380 381first strand
Strand 2
D
338 343parallel
Strand 3
D
425 431anti-parallel
Strand 4
D
417 422anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
349 355first strand
Strand 2
D
384 391parallel
Strand 3
D
462 468anti-parallel
Strand 4
D
366 369parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
518 520first strand
Strand 2
D
502 506anti-parallel
Strand 3
D
548 552anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
556 558first strand
Strand 2
D
563 564anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
644 647first strand
Strand 2
D
600 605anti-parallel
Strand 3
D
610 615anti-parallel
Strand 4
D
667 669parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
380 381first strand
Strand 2
E
338 343parallel
Strand 3
E
425 431anti-parallel
Strand 4
E
417 422anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
349 355first strand
Strand 2
E
384 391parallel
Strand 3
E
462 468anti-parallel
Strand 4
E
366 369parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
518 520first strand
Strand 2
E
502 506anti-parallel
Strand 3
E
548 552anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
556 558first strand
Strand 2
E
563 564anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
644 647first strand
Strand 2
E
600 605anti-parallel
Strand 3
E
610 615anti-parallel
Strand 4
E
667 669parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
380 381first strand
Strand 2
F
338 343parallel
Strand 3
F
425 431anti-parallel
Strand 4
F
417 422anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
349 355first strand
Strand 2
F
384 391parallel
Strand 3
F
462 468anti-parallel
Strand 4
F
366 369parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
518 520first strand
Strand 2
F
502 506anti-parallel
Strand 3
F
548 552anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
556 558first strand
Strand 2
F
563 564anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
644 647first strand
Strand 2
F
600 605anti-parallel
Strand 3
F
610 615anti-parallel
Strand 4
F
667 669parallel
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