Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJ8 entry

There are 4 chains in PDB entry 3GJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LEU 209
B
 GLY 848PRO 874
C
 GLU 6LEU 209
D
 SER 849PRO 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3GJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 28Right-handed alpha
Helix 2
2
A
30 36Right-handed alpha
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
94 100Right-handed alpha
Helix 6
6
A
100 113Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
158 170Right-handed alpha
Helix 9
9
A
190 207Right-handed alpha
Helix 10
10
C
22 28Right-handed alpha
Helix 11
11
C
30 36Right-handed alpha
Helix 12
12
C
68 73Right-handed 310
Helix 13
13
C
76 81Right-handed alpha
Helix 14
14
C
94 100Right-handed alpha
Helix 15
15
C
100 113Right-handed alpha
Helix 16
16
C
132 136Right-handed 310
Helix 17
17
C
137 143Right-handed alpha
Helix 18
18
C
158 170Right-handed alpha
Helix 19
19
C
190 207Right-handed alpha
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There are 4 sheets in PDB entry 3GJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
10 16parallel
Strand 5
A
85 91parallel
Strand 6
A
117 122parallel
Strand 7
A
145 148parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
850 851first strand
Strand 2
B
858 859anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
45 54anti-parallel
Strand 3
C
57 66anti-parallel
Strand 4
C
10 16parallel
Strand 5
C
85 91parallel
Strand 6
C
117 122parallel
Strand 7
C
145 148parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
850 851first strand
Strand 2
D
858 859anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il