Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJB entry

There are 2 chains in PDB entry 3GJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8ILE 317
B
 ALA 8SER 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
33 49Right-handed alpha
Helix 3
3
A
61 66Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
74 83Right-handed alpha
Helix 6
6
A
83 95Right-handed alpha
Helix 7
7
A
284 286Right-handed 310
Helix 8
8
B
13 24Right-handed alpha
Helix 9
9
B
33 49Right-handed alpha
Helix 10
10
B
61 66Right-handed alpha
Helix 11
11
B
69 73Right-handed 310
Helix 12
12
B
74 82Right-handed alpha
Helix 13
13
B
83 95Right-handed alpha
Helix 14
14
B
284 286Right-handed 310
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There are 8 sheets in PDB entry 3GJB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
253 262anti-parallel
Strand 5
A
98 108anti-parallel
Strand 6
A
289 292anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
240 242anti-parallel
Strand 3
A
115 120anti-parallel
Strand 4
B
115 120anti-parallel
Strand 5
B
240 242anti-parallel
Strand 6
B
163 165anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
266 267anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
B
174 175anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
281 282anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 30first strand
Strand 2
B
230 235anti-parallel
Strand 3
B
147 152anti-parallel
Strand 4
B
253 262anti-parallel
Strand 5
B
98 108anti-parallel
Strand 6
B
289 290anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
266 267anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
281 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il