Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJF entry

There are 10 chains in PDB entry 3GJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 276
B
 MET 0MET 99
C
 SER 1VAL 9
D
 GLY 1PRO 276
E
 MET 0MET 99
F
 SER 1VAL 9
L
 GLN 1THR 212
K
 GLN 1THR 212
H
 GLU 1LYS 220
M
 GLU 1LYS 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3GJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 55Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 150Right-handed alpha
Helix 4
4
A
151 161Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
175 180Right-handed alpha
Helix 7
7
A
253 255Right-handed 310
Helix 8
8
D
49 53Right-handed 310
Helix 9
9
D
56 85Right-handed alpha
Helix 10
10
D
137 150Right-handed alpha
Helix 11
11
D
151 162Right-handed alpha
Helix 12
12
D
162 175Right-handed alpha
Helix 13
13
D
175 180Right-handed alpha
Helix 14
14
D
253 255Right-handed 310
Helix 15
15
L
81 85Right-handed 310
Helix 16
16
L
124 130Right-handed alpha
Helix 17
17
L
184 189Right-handed alpha
Helix 18
18
K
81 85Right-handed 310
Helix 19
19
K
124 130Right-handed alpha
Helix 20
20
K
184 191Right-handed alpha
Helix 21
21
H
28 32Right-handed 310
Helix 22
22
H
62 65Right-handed 310
Helix 23
23
H
74 76Right-handed 310
Helix 24
24
H
87 91Right-handed 310
Helix 25
25
H
207 210Right-handed 310
Helix 26
26
M
28 32Right-handed 310
Helix 27
27
M
74 76Right-handed 310
Helix 28
28
M
87 91Right-handed 310
Helix 29
29
M
162 164Right-handed 310
Helix 30
30
M
193 197Right-handed 310
Helix 31
31
M
207 210Right-handed 310
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There are 37 sheets in PDB entry 3GJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
270 273anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
31 37anti-parallel
Strand 3
D
21 28anti-parallel
Strand 4
D
3 12anti-parallel
Strand 5
D
94 103anti-parallel
Strand 6
D
109 118anti-parallel
Strand 7
D
121 126anti-parallel
Strand 8
D
133 135anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 193first strand
Strand 2
D
198 208anti-parallel
Strand 3
D
241 250anti-parallel
Strand 4
D
228 230anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 193first strand
Strand 2
D
198 208anti-parallel
Strand 3
D
241 250anti-parallel
Strand 4
D
234 235anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 224first strand
Strand 2
D
214 219anti-parallel
Strand 3
D
257 262anti-parallel
Strand 4
D
270 273anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
62 70anti-parallel
Strand 4
E
50 51anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
62 70anti-parallel
Strand 4
E
55 56anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 45first strand
Strand 2
E
36 41anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
91 94anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 51anti-parallel
Strand 6
L
55 56anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
98 100anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
64 69anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
135 142anti-parallel
Strand 3
L
175 181anti-parallel
Strand 4
L
162 164anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
135 142anti-parallel
Strand 3
L
175 181anti-parallel
Strand 4
L
168 169anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
199 200first strand
Strand 2
L
203 204anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
9 12first strand
Strand 2
K
104 108parallel
Strand 3
K
86 93anti-parallel
Strand 4
K
35 40anti-parallel
Strand 5
K
47 51anti-parallel
Strand 6
K
55 56anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
9 12first strand
Strand 2
K
104 108parallel
Strand 3
K
86 93anti-parallel
Strand 4
K
98 100anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
18 23first strand
Strand 2
K
72 77anti-parallel
Strand 3
K
64 69anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
117 121first strand
Strand 2
K
133 142anti-parallel
Strand 3
K
175 183anti-parallel
Strand 4
K
162 164anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
117 121first strand
Strand 2
K
133 142anti-parallel
Strand 3
K
175 183anti-parallel
Strand 4
K
168 169anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
157 158first strand
Strand 2
K
148 152anti-parallel
Strand 3
K
194 200anti-parallel
Strand 4
K
203 209anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
108 109anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
142 144first strand
Strand 2
H
186 190anti-parallel
Strand 3
H
169 171anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 160first strand
Strand 2
H
201 206anti-parallel
Strand 3
H
211 216anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
175 176first strand
Strand 2
H
182 183anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
3 7first strand
Strand 2
M
18 25anti-parallel
Strand 3
M
78 83anti-parallel
Strand 4
M
68 73anti-parallel
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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 12first strand
Strand 2
M
113 117parallel
Strand 3
M
92 99anti-parallel
Strand 4
M
33 39anti-parallel
Strand 5
M
45 51anti-parallel
Strand 6
M
58 60anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 12first strand
Strand 2
M
113 117parallel
Strand 3
M
92 99anti-parallel
Strand 4
M
108 109anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
126 130first strand
Strand 2
M
141 149anti-parallel
Strand 3
M
184 191anti-parallel
Strand 4
M
169 171anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
157 160first strand
Strand 2
M
201 206anti-parallel
Strand 3
M
211 216anti-parallel
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