Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJS entry

There are 6 chains in PDB entry 3GJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 34THR 174
B
 CYS 184HIS 278
C
 ASN 35THR 174
D
 LYS 186HIS 277
E
 TYR 2ALA 4
F
 TYR 7ALA 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3GJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
92 105Right-handed alpha
Helix 4
4
A
136 141Right-handed alpha
Helix 5
5
A
142 144Right-handed 310
Helix 6
6
A
148 152Right-handed 310
Helix 7
7
B
214 227Right-handed alpha
Helix 8
8
B
231 247Right-handed alpha
Helix 9
9
B
253 257Right-handed 310
Helix 10
10
C
66 81Right-handed alpha
Helix 11
11
C
92 105Right-handed alpha
Helix 12
12
C
136 141Right-handed alpha
Helix 13
13
C
142 144Right-handed 310
Helix 14
14
C
148 152Right-handed 310
Helix 15
15
D
214 227Right-handed alpha
Helix 16
16
D
231 247Right-handed alpha
Helix 17
17
D
253 257Right-handed 310
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There are 6 sheets in PDB entry 3GJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 119parallel
Strand 4
A
156 161parallel
Strand 5
B
193 197parallel
Strand 6
B
264 267anti-parallel
Strand 7
D
264 267anti-parallel
Strand 8
D
193 197anti-parallel
Strand 9
C
156 161parallel
Strand 10
C
111 119parallel
Strand 11
C
43 51parallel
Strand 12
C
84 89parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
132 135anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
C
172 173anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
206 208anti-parallel
Strand 3
E
3 4anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
126 129anti-parallel
Strand 3
C
132 135anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
206 208anti-parallel
Strand 3
F
8 9anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il