Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJU entry

There are 2 chains in PDB entry 3GJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 288
A
 GLY 290ALA 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3GJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
22 28Right-handed alpha
Helix 3
3
A
56 61Right-handed alpha
Helix 4
4
A
68 83Right-handed alpha
Helix 5
5
A
93 107Right-handed alpha
Helix 6
6
A
119 138Right-handed alpha
Helix 7
7
A
157 164Right-handed alpha
Helix 8
8
A
166 170Right-handed 310
Helix 9
9
A
187 191Right-handed 310
Helix 10
10
A
197 217Right-handed alpha
Helix 11
11
A
241 253Right-handed alpha
Helix 12
12
A
273 279Right-handed alpha
Helix 13
13
A
288 292Right-handed 310
Helix 14
14
A
305 319Right-handed alpha
Helix 15
15
A
330 347Right-handed alpha
Helix 16
16
A
348 369Right-handed alpha
Helix 17
17
A
399 402Right-handed 310
Helix 18
18
A
403 415Right-handed alpha
Helix 19
19
A
437 457Right-handed alpha
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There are 3 sheets in PDB entry 3GJU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
417 418parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
299 304anti-parallel
Strand 3
A
284 287anti-parallel
Strand 4
A
256 260parallel
Strand 5
A
221 226parallel
Strand 6
A
145 149parallel
Strand 7
A
180 183parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 380first strand
Strand 2
A
383 388anti-parallel
Strand 3
A
427 430anti-parallel
Strand 4
A
420 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il