Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GJX entry

There are 3 chains in PDB entry 3GJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY -1	ASN 360
C	VAL 9	MET 179
A	ALA 12	ARG 796

There are157 helices in PDB entry 3GJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	-1	11	Right-handed alpha
Helix 2	2	B	25	29	Right-handed 310
Helix 3	3	B	41	51	Right-handed alpha
Helix 4	4	B	57	68	Right-handed alpha
Helix 5	5	B	114	118	Right-handed alpha
Helix 6	6	B	200	212	Right-handed alpha
Helix 7	7	B	213	215	Right-handed 310
Helix 8	8	B	238	246	Right-handed alpha
Helix 9	9	B	278	283	Right-handed alpha
Helix 10	10	C	22	32	Right-handed alpha
Helix 11	11	C	69	73	Right-handed 310
Helix 12	12	C	75	80	Right-handed 310
Helix 13	13	C	94	112	Right-handed alpha
Helix 14	14	C	132	136	Right-handed 310
Helix 15	15	C	137	141	Right-handed 310
Helix 16	16	C	158	169	Right-handed alpha
Helix 17	17	A	24	34	Right-handed alpha
Helix 18	18	A	39	52	Right-handed alpha
Helix 19	19	A	58	64	Right-handed alpha
Helix 20	20	A	72	90	Right-handed alpha
Helix 21	21	A	91	94	Right-handed 310
Helix 22	22	A	95	115	Right-handed alpha
Helix 23	23	A	116	121	Right-handed 310
Helix 24	24	A	123	142	Right-handed alpha
Helix 25	25	A	148	160	Right-handed alpha
Helix 26	26	A	160	179	Right-handed alpha
Helix 27	27	A	181	186	Right-handed alpha
Helix 28	28	A	187	201	Right-handed alpha
Helix 29	29	A	202	216	Right-handed alpha
Helix 30	30	A	218	233	Right-handed alpha
Helix 31	31	A	238	243	Right-handed alpha
Helix 32	32	A	245	254	Right-handed alpha
Helix 33	33	A	257	274	Right-handed alpha
Helix 34	34	A	276	278	Right-handed 310
Helix 35	35	A	279	298	Right-handed alpha
Helix 36	36	A	303	310	Right-handed alpha
Helix 37	37	A	314	340	Right-handed alpha
Helix 38	38	A	343	358	Right-handed alpha
Helix 39	39	A	362	384	Right-handed alpha
Helix 40	40	A	403	408	Right-handed alpha
Helix 41	41	A	409	423	Right-handed alpha
Helix 42	42	A	448	468	Right-handed alpha
Helix 43	43	A	468	485	Right-handed alpha
Helix 44	44	A	490	504	Right-handed alpha
Helix 45	45	A	509	531	Right-handed alpha
Helix 46	46	A	533	551	Right-handed alpha
Helix 47	47	A	551	558	Right-handed alpha
Helix 48	48	A	558	573	Right-handed alpha
Helix 49	49	A	579	595	Right-handed alpha
Helix 50	50	A	596	600	Right-handed 310
Helix 51	51	A	609	616	Right-handed alpha
Helix 52	52	A	617	623	Right-handed alpha
Helix 53	53	A	626	642	Right-handed alpha
Helix 54	54	A	646	658	Right-handed alpha
Helix 55	55	A	658	675	Right-handed alpha
Helix 56	56	A	676	680	Right-handed 310
Helix 57	57	A	681	703	Right-handed alpha
Helix 58	58	A	706	736	Right-handed alpha
Helix 59	59	A	737	741	Right-handed 310
Helix 60	60	A	742	764	Right-handed alpha
Helix 61	61	A	768	776	Right-handed alpha
Helix 62	62	A	777	784	Right-handed alpha
Helix 63	63	A	784	791	Right-handed alpha
Helix 64	64	A	792	797	Right-handed 310
Helix 65	65	A	798	812	Right-handed alpha
Helix 66	66	A	813	817	Right-handed 310
Helix 67	67	A	818	835	Right-handed alpha
Helix 68	68	A	841	859	Right-handed alpha
Helix 69	69	A	860	863	Right-handed 310
Helix 70	70	A	867	883	Right-handed alpha
Helix 71	71	A	886	905	Right-handed alpha
Helix 72	72	A	907	931	Right-handed alpha
Helix 73	73	A	935	937	Right-handed 310
Helix 74	74	A	938	954	Right-handed alpha
Helix 75	75	A	969	986	Right-handed alpha
Helix 76	76	A	990	1004	Right-handed alpha
Helix 77	77	A	1007	1023	Right-handed alpha
Helix 78	78	A	1036	1053	Right-handed alpha
Helix 79	79	E	-1	11	Right-handed alpha
Helix 80	80	E	25	29	Right-handed 310
Helix 81	81	E	41	51	Right-handed alpha
Helix 82	82	E	57	68	Right-handed alpha
Helix 83	83	E	114	118	Right-handed alpha
Helix 84	84	E	200	212	Right-handed alpha
Helix 85	85	E	213	215	Right-handed 310
Helix 86	86	E	238	246	Right-handed alpha
Helix 87	87	E	278	286	Right-handed alpha
Helix 88	88	F	22	32	Right-handed alpha
Helix 89	89	F	69	73	Right-handed 310
Helix 90	90	F	75	80	Right-handed 310
Helix 91	91	F	94	112	Right-handed alpha
Helix 92	92	F	132	136	Right-handed 310
Helix 93	93	F	137	141	Right-handed 310
Helix 94	94	F	158	170	Right-handed alpha
Helix 95	95	D	23	34	Right-handed alpha
Helix 96	96	D	39	52	Right-handed alpha
Helix 97	97	D	58	65	Right-handed alpha
Helix 98	98	D	72	90	Right-handed alpha
Helix 99	99	D	91	94	Right-handed 310
Helix 100	100	D	95	115	Right-handed alpha
Helix 101	101	D	116	121	Right-handed 310
Helix 102	102	D	123	142	Right-handed alpha
Helix 103	103	D	148	160	Right-handed alpha
Helix 104	104	D	160	179	Right-handed alpha
Helix 105	105	D	181	186	Right-handed alpha
Helix 106	106	D	187	201	Right-handed alpha
Helix 107	107	D	202	216	Right-handed alpha
Helix 108	108	D	218	233	Right-handed alpha
Helix 109	109	D	238	243	Right-handed alpha
Helix 110	110	D	245	254	Right-handed alpha
Helix 111	111	D	257	274	Right-handed alpha
Helix 112	112	D	276	278	Right-handed 310
Helix 113	113	D	279	298	Right-handed alpha
Helix 114	114	D	303	310	Right-handed alpha
Helix 115	115	D	314	340	Right-handed alpha
Helix 116	116	D	343	358	Right-handed alpha
Helix 117	117	D	362	384	Right-handed alpha
Helix 118	118	D	403	408	Right-handed alpha
Helix 119	119	D	409	423	Right-handed alpha
Helix 120	120	D	448	468	Right-handed alpha
Helix 121	121	D	468	485	Right-handed alpha
Helix 122	122	D	490	504	Right-handed alpha
Helix 123	123	D	509	531	Right-handed alpha
Helix 124	124	D	533	551	Right-handed alpha
Helix 125	125	D	551	558	Right-handed alpha
Helix 126	126	D	558	572	Right-handed alpha
Helix 127	127	D	573	575	Right-handed 310
Helix 128	128	D	579	595	Right-handed alpha
Helix 129	129	D	596	600	Right-handed 310
Helix 130	130	D	609	616	Right-handed alpha
Helix 131	131	D	617	623	Right-handed alpha
Helix 132	132	D	626	642	Right-handed alpha
Helix 133	133	D	646	658	Right-handed alpha
Helix 134	134	D	658	675	Right-handed alpha
Helix 135	135	D	676	680	Right-handed 310
Helix 136	136	D	681	703	Right-handed alpha
Helix 137	137	D	706	736	Right-handed alpha
Helix 138	138	D	737	741	Right-handed 310
Helix 139	139	D	742	764	Right-handed alpha
Helix 140	140	D	768	776	Right-handed alpha
Helix 141	141	D	777	784	Right-handed alpha
Helix 142	142	D	784	791	Right-handed alpha
Helix 143	143	D	792	797	Right-handed 310
Helix 144	144	D	798	812	Right-handed alpha
Helix 145	145	D	813	817	Right-handed 310
Helix 146	146	D	818	835	Right-handed alpha
Helix 147	147	D	841	859	Right-handed alpha
Helix 148	148	D	860	863	Right-handed 310
Helix 149	149	D	867	883	Right-handed alpha
Helix 150	150	D	886	905	Right-handed alpha
Helix 151	151	D	907	931	Right-handed alpha
Helix 152	152	D	935	937	Right-handed 310
Helix 153	153	D	938	954	Right-handed alpha
Helix 154	154	D	969	986	Right-handed alpha
Helix 155	155	D	990	1004	Right-handed alpha
Helix 156	156	D	1007	1023	Right-handed alpha
Helix 157	157	D	1036	1054	Right-handed alpha

There are 10 sheets in PDB entry 3GJX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	269	277	parallel
Strand 3	B	254	261	anti-parallel
Strand 4	B	119	125	anti-parallel
Strand 5	B	234	236	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	170	177	anti-parallel
Strand 5	B	182	191	anti-parallel
Strand 6	B	194	195	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	170	177	anti-parallel
Strand 5	B	182	191	anti-parallel
Strand 6	B	228	231	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	54	first strand
Strand 2	C	57	66	anti-parallel
Strand 3	C	10	17	parallel
Strand 4	C	85	91	parallel
Strand 5	C	117	122	parallel
Strand 6	C	145	148	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	444	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	269	277	parallel
Strand 3	E	254	261	anti-parallel
Strand 4	E	119	125	anti-parallel
Strand 5	E	234	236	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	152	first strand
Strand 2	E	138	142	anti-parallel
Strand 3	E	128	135	anti-parallel
Strand 4	E	170	177	anti-parallel
Strand 5	E	182	191	anti-parallel
Strand 6	E	194	195	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	152	first strand
Strand 2	E	138	142	anti-parallel
Strand 3	E	128	135	anti-parallel
Strand 4	E	170	177	anti-parallel
Strand 5	E	182	191	anti-parallel
Strand 6	E	228	231	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	54	first strand
Strand 2	F	57	66	anti-parallel
Strand 3	F	10	17	parallel
Strand 4	F	85	91	parallel
Strand 5	F	117	122	parallel
Strand 6	F	145	148	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	432	first strand
Strand 2	D	442	444	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJX