Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJY entry

There is 1 chain in PDB entry 3GJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 18PRO 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3GJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 83Right-handed alpha
Helix 2
2
A
84 87Right-handed 310
Helix 3
3
A
95 97Right-handed 310
Helix 4
4
A
98 108Right-handed alpha
Helix 5
5
A
119 130Right-handed alpha
Helix 6
6
A
144 151Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
176 186Right-handed alpha
Helix 9
9
A
203 217Right-handed alpha
Helix 10
10
A
225 230Right-handed alpha
Helix 11
11
A
251 262Right-handed alpha
Helix 12
12
A
272 280Right-handed alpha
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There are 2 sheets in PDB entry 3GJY. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
50 56anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
112 117parallel
Strand 3
A
89 93parallel
Strand 4
A
157 162parallel
Strand 5
A
187 199parallel
Strand 6
A
235 242anti-parallel
Strand 7
A
219 224anti-parallel
Strand 8
A
269 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il