Analysis of interatomic Contacts of Structural Units in PDB entry:
3GJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GJZ entry

There are 2 chains in PDB entry 3GJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ILE 333
B
 MSE 1ILE 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3GJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 26Right-handed alpha
Helix 2
2
A
26 40Right-handed alpha
Helix 3
3
A
60 73Right-handed alpha
Helix 4
4
A
88 96Right-handed 310
Helix 5
5
A
97 104Right-handed alpha
Helix 6
6
A
111 113Right-handed 310
Helix 7
7
A
114 126Right-handed alpha
Helix 8
8
A
134 140Right-handed alpha
Helix 9
9
A
144 158Right-handed alpha
Helix 10
10
A
211 215Right-handed alpha
Helix 11
11
A
240 254Right-handed alpha
Helix 12
12
A
255 260Right-handed alpha
Helix 13
13
A
279 289Right-handed alpha
Helix 14
14
B
21 26Right-handed alpha
Helix 15
15
B
26 41Right-handed alpha
Helix 16
16
B
60 73Right-handed alpha
Helix 17
17
B
88 96Right-handed 310
Helix 18
18
B
97 104Right-handed alpha
Helix 19
19
B
111 113Right-handed 310
Helix 20
20
B
114 126Right-handed alpha
Helix 21
21
B
134 140Right-handed alpha
Helix 22
22
B
144 158Right-handed alpha
Helix 23
23
B
211 215Right-handed alpha
Helix 24
24
B
240 254Right-handed alpha
Helix 25
25
B
255 260Right-handed alpha
Helix 26
26
B
279 289Right-handed alpha
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There are 6 sheets in PDB entry 3GJZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
12 16parallel
Strand 3
A
77 82parallel
Strand 4
A
107 110parallel
Strand 5
A
129 131parallel
Strand 6
A
310 312anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
324 327anti-parallel
Strand 3
A
315 319anti-parallel
Strand 4
A
201 210anti-parallel
Strand 5
A
231 235parallel
Strand 6
A
262 266parallel
Strand 7
A
295 299parallel
Strand 8
A
195 198anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
190 191anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
12 16parallel
Strand 3
B
77 82parallel
Strand 4
B
107 110parallel
Strand 5
B
129 131parallel
Strand 6
B
310 312anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
324 327anti-parallel
Strand 3
B
315 319anti-parallel
Strand 4
B
201 210anti-parallel
Strand 5
B
231 235parallel
Strand 6
B
262 266parallel
Strand 7
B
295 299parallel
Strand 8
B
195 198anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
190 191anti-parallel
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