Analysis of interatomic Contacts of Structural Units in PDB entry:
3GK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GK0 entry

There are 8 chains in PDB entry 3GK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3HIS 254
B
 PHE 3HIS 254
C
 ALA 10LEU 253
D
 ALA 9HIS 254
E
 ALA 10HIS 254
F
 ALA 10LEU 253
G
 ALA 10HIS 254
H
 ALA 9HIS 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 3GK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
33 44Right-handed alpha
Helix 4
4
A
61 72Right-handed alpha
Helix 5
5
A
83 94Right-handed alpha
Helix 6
6
A
104 108Right-handed 310
Helix 7
7
A
119 133Right-handed alpha
Helix 8
8
A
144 155Right-handed alpha
Helix 9
9
A
163 168Right-handed alpha
Helix 10
10
A
171 192Right-handed alpha
Helix 11
11
A
206 212Right-handed alpha
Helix 12
12
A
222 233Right-handed alpha
Helix 13
13
A
233 254Right-handed alpha
Helix 14
14
B
7 11Right-handed 310
Helix 15
15
B
17 26Right-handed alpha
Helix 16
16
B
33 44Right-handed alpha
Helix 17
17
B
61 69Right-handed alpha
Helix 18
18
B
83 94Right-handed alpha
Helix 19
19
B
104 108Right-handed 310
Helix 20
20
B
119 133Right-handed alpha
Helix 21
21
B
144 155Right-handed alpha
Helix 22
22
B
163 168Right-handed alpha
Helix 23
23
B
171 192Right-handed alpha
Helix 24
24
B
206 212Right-handed alpha
Helix 25
25
B
222 233Right-handed alpha
Helix 26
26
B
233 254Right-handed alpha
Helix 27
27
C
17 26Right-handed alpha
Helix 28
28
C
33 44Right-handed alpha
Helix 29
29
C
61 69Right-handed alpha
Helix 30
30
C
70 72Right-handed 310
Helix 31
31
C
83 94Right-handed alpha
Helix 32
32
C
119 133Right-handed alpha
Helix 33
33
C
144 154Right-handed alpha
Helix 34
34
C
163 168Right-handed alpha
Helix 35
35
C
171 192Right-handed alpha
Helix 36
36
C
206 212Right-handed alpha
Helix 37
37
C
222 233Right-handed alpha
Helix 38
38
C
233 253Right-handed alpha
Helix 39
39
D
17 28Right-handed alpha
Helix 40
40
D
33 44Right-handed alpha
Helix 41
41
D
61 69Right-handed alpha
Helix 42
42
D
83 94Right-handed alpha
Helix 43
43
D
104 108Right-handed 310
Helix 44
44
D
119 133Right-handed alpha
Helix 45
45
D
144 154Right-handed alpha
Helix 46
46
D
163 169Right-handed alpha
Helix 47
47
D
171 192Right-handed alpha
Helix 48
48
D
206 212Right-handed alpha
Helix 49
49
D
222 233Right-handed alpha
Helix 50
50
D
233 254Right-handed alpha
Helix 51
51
E
17 26Right-handed alpha
Helix 52
52
E
33 44Right-handed alpha
Helix 53
53
E
61 69Right-handed alpha
Helix 54
54
E
83 94Right-handed alpha
Helix 55
55
E
104 108Right-handed 310
Helix 56
56
E
116 118Right-handed 310
Helix 57
57
E
119 133Right-handed alpha
Helix 58
58
E
144 154Right-handed alpha
Helix 59
59
E
163 169Right-handed alpha
Helix 60
60
E
171 192Right-handed alpha
Helix 61
61
E
206 212Right-handed alpha
Helix 62
62
E
222 233Right-handed alpha
Helix 63
63
E
233 254Right-handed alpha
Helix 64
64
F
17 26Right-handed alpha
Helix 65
65
F
33 44Right-handed alpha
Helix 66
66
F
61 69Right-handed alpha
Helix 67
67
F
70 72Right-handed 310
Helix 68
68
F
83 94Right-handed alpha
Helix 69
69
F
104 108Right-handed 310
Helix 70
70
F
119 133Right-handed alpha
Helix 71
71
F
144 154Right-handed alpha
Helix 72
72
F
163 168Right-handed alpha
Helix 73
73
F
171 192Right-handed alpha
Helix 74
74
F
206 212Right-handed alpha
Helix 75
75
F
222 233Right-handed alpha
Helix 76
76
F
233 253Right-handed alpha
Helix 77
77
G
17 28Right-handed alpha
Helix 78
78
G
33 45Right-handed alpha
Helix 79
79
G
61 69Right-handed alpha
Helix 80
80
G
70 72Right-handed 310
Helix 81
81
G
83 94Right-handed alpha
Helix 82
82
G
104 108Right-handed 310
Helix 83
83
G
116 118Right-handed 310
Helix 84
84
G
119 133Right-handed alpha
Helix 85
85
G
144 155Right-handed alpha
Helix 86
86
G
163 168Right-handed alpha
Helix 87
87
G
171 192Right-handed alpha
Helix 88
88
G
206 212Right-handed alpha
Helix 89
89
G
222 233Right-handed alpha
Helix 90
90
G
233 254Right-handed alpha
Helix 91
91
H
17 26Right-handed alpha
Helix 92
92
H
33 44Right-handed alpha
Helix 93
93
H
61 69Right-handed alpha
Helix 94
94
H
83 94Right-handed alpha
Helix 95
95
H
104 108Right-handed 310
Helix 96
96
H
119 133Right-handed alpha
Helix 97
97
H
144 155Right-handed alpha
Helix 98
98
H
163 169Right-handed alpha
Helix 99
99
H
171 192Right-handed alpha
Helix 100
100
H
206 213Right-handed alpha
Helix 101
101
H
222 233Right-handed alpha
Helix 102
102
H
233 254Right-handed alpha
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There are 8 sheets in PDB entry 3GK0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
48 52parallel
Strand 3
A
76 80parallel
Strand 4
A
97 100parallel
Strand 5
A
136 141parallel
Strand 6
A
158 161parallel
Strand 7
A
195 198parallel
Strand 8
A
216 221parallel
Strand 9
A
12 16parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
48 52parallel
Strand 3
B
76 80parallel
Strand 4
B
97 100parallel
Strand 5
B
136 141parallel
Strand 6
B
158 161parallel
Strand 7
B
195 198parallel
Strand 8
B
216 221parallel
Strand 9
B
12 16parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
48 52parallel
Strand 3
C
76 80parallel
Strand 4
C
97 100parallel
Strand 5
C
136 141parallel
Strand 6
C
158 161parallel
Strand 7
C
195 198parallel
Strand 8
C
216 221parallel
Strand 9
C
12 16parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
48 52parallel
Strand 3
D
76 80parallel
Strand 4
D
97 100parallel
Strand 5
D
136 141parallel
Strand 6
D
158 161parallel
Strand 7
D
195 198parallel
Strand 8
D
216 221parallel
Strand 9
D
12 16parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
48 52parallel
Strand 3
E
76 80parallel
Strand 4
E
97 100parallel
Strand 5
E
136 141parallel
Strand 6
E
158 161parallel
Strand 7
E
195 198parallel
Strand 8
E
216 221parallel
Strand 9
E
12 16parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
48 52parallel
Strand 3
F
76 80parallel
Strand 4
F
97 100parallel
Strand 5
F
136 141parallel
Strand 6
F
158 161parallel
Strand 7
F
195 198parallel
Strand 8
F
216 221parallel
Strand 9
F
12 16parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 16first strand
Strand 2
G
48 52parallel
Strand 3
G
76 80parallel
Strand 4
G
97 100parallel
Strand 5
G
136 141parallel
Strand 6
G
158 161parallel
Strand 7
G
195 198parallel
Strand 8
G
216 221parallel
Strand 9
G
12 16parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 16first strand
Strand 2
H
48 52parallel
Strand 3
H
76 80parallel
Strand 4
H
97 100parallel
Strand 5
H
136 141parallel
Strand 6
H
158 161parallel
Strand 7
H
195 198parallel
Strand 8
H
216 221parallel
Strand 9
H
12 16parallel
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