Analysis of interatomic Contacts of Structural Units in PDB entry:
3GK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GK7 entry

There are 2 chains in PDB entry 3GK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 447
B
 MET 1GLU 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3GK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 10Right-handed alpha
Helix 2
2
A
13 18Right-handed alpha
Helix 3
3
A
19 21Right-handed 310
Helix 4
4
A
31 35Right-handed 310
Helix 5
5
A
36 46Right-handed alpha
Helix 6
6
A
47 50Right-handed 310
Helix 7
7
A
64 72Right-handed 310
Helix 8
8
A
86 93Right-handed alpha
Helix 9
9
A
101 103Right-handed 310
Helix 10
10
A
104 111Right-handed alpha
Helix 11
11
A
140 148Right-handed alpha
Helix 12
12
A
171 173Right-handed 310
Helix 13
13
A
192 204Right-handed alpha
Helix 14
14
A
217 226Right-handed alpha
Helix 15
15
A
241 250Right-handed alpha
Helix 16
16
A
273 281Right-handed alpha
Helix 17
17
A
290 295Right-handed alpha
Helix 18
18
A
296 301Right-handed alpha
Helix 19
19
A
336 346Right-handed alpha
Helix 20
20
A
406 417Right-handed alpha
Helix 21
21
A
418 421Right-handed 310
Helix 22
22
A
422 435Right-handed alpha
Helix 23
23
A
443 447Right-handed 310
Helix 24
24
B
1 10Right-handed alpha
Helix 25
25
B
13 18Right-handed alpha
Helix 26
26
B
19 21Right-handed 310
Helix 27
27
B
31 35Right-handed 310
Helix 28
28
B
36 46Right-handed alpha
Helix 29
29
B
47 50Right-handed 310
Helix 30
30
B
64 72Right-handed 310
Helix 31
31
B
86 93Right-handed alpha
Helix 32
32
B
101 103Right-handed 310
Helix 33
33
B
104 111Right-handed alpha
Helix 34
34
B
140 148Right-handed alpha
Helix 35
35
B
171 173Right-handed 310
Helix 36
36
B
192 204Right-handed alpha
Helix 37
37
B
217 226Right-handed alpha
Helix 38
38
B
241 250Right-handed alpha
Helix 39
39
B
273 281Right-handed alpha
Helix 40
40
B
290 295Right-handed alpha
Helix 41
41
B
296 301Right-handed alpha
Helix 42
42
B
336 346Right-handed alpha
Helix 43
43
B
406 417Right-handed alpha
Helix 44
44
B
418 421Right-handed 310
Helix 45
45
B
422 435Right-handed alpha
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There are 12 sheets in PDB entry 3GK7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
75 79parallel
Strand 3
A
53 57parallel
Strand 4
A
26 29parallel
Strand 5
A
118 123parallel
Strand 6
A
150 156parallel
Strand 7
A
175 179parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
167 169anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
265 270parallel
Strand 3
A
234 240parallel
Strand 4
A
211 213parallel
Strand 5
A
306 311parallel
Strand 6
A
353 357parallel
Strand 7
A
392 395parallel
Strand 8
A
398 401anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
314 316anti-parallel
Strand 3
A
373 374parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
329 330anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
369 371anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
75 79parallel
Strand 3
B
53 57parallel
Strand 4
B
26 29parallel
Strand 5
B
118 123parallel
Strand 6
B
150 156parallel
Strand 7
B
175 179parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
167 169anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 288first strand
Strand 2
B
265 270parallel
Strand 3
B
234 240parallel
Strand 4
B
211 213parallel
Strand 5
B
306 311parallel
Strand 6
B
353 357parallel
Strand 7
B
392 395parallel
Strand 8
B
398 401anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
314 316anti-parallel
Strand 3
B
373 374parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
329 330anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 363first strand
Strand 2
B
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il