Analysis of interatomic Contacts of Structural Units in PDB entry:
3GL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GL1 entry

There are 2 chains in PDB entry 3GL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 384
B
 GLY 4THR 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3GL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 60Right-handed alpha
Helix 2
2
A
61 66Right-handed 310
Helix 3
3
A
71 75Right-handed 310
Helix 4
4
A
82 90Right-handed alpha
Helix 5
5
A
117 138Right-handed alpha
Helix 6
6
A
153 167Right-handed alpha
Helix 7
7
A
177 185Right-handed alpha
Helix 8
8
A
232 253Right-handed alpha
Helix 9
9
A
259 277Right-handed alpha
Helix 10
10
A
302 309Right-handed alpha
Helix 11
11
A
309 316Right-handed alpha
Helix 12
12
A
316 328Right-handed alpha
Helix 13
13
A
330 334Right-handed 310
Helix 14
14
A
341 345Right-handed 310
Helix 15
15
A
346 357Right-handed alpha
Helix 16
16
A
370 384Right-handed alpha
Helix 17
17
B
54 59Right-handed alpha
Helix 18
18
B
64 66Right-handed 310
Helix 19
19
B
71 75Right-handed 310
Helix 20
20
B
82 90Right-handed alpha
Helix 21
21
B
117 138Right-handed alpha
Helix 22
22
B
153 167Right-handed alpha
Helix 23
23
B
177 185Right-handed alpha
Helix 24
24
B
188 192Right-handed 310
Helix 25
25
B
232 253Right-handed alpha
Helix 26
26
B
259 278Right-handed alpha
Helix 27
27
B
302 309Right-handed alpha
Helix 28
28
B
309 316Right-handed alpha
Helix 29
29
B
316 328Right-handed alpha
Helix 30
30
B
330 334Right-handed 310
Helix 31
31
B
341 345Right-handed 310
Helix 32
32
B
346 357Right-handed alpha
Helix 33
33
B
370 383Right-handed alpha
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There are 12 sheets in PDB entry 3GL1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
40 41anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
10 13anti-parallel
Strand 4
A
143 148parallel
Strand 5
A
170 176parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
44 46anti-parallel
Strand 3
A
68 69anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
102 109anti-parallel
Strand 3
A
112 116anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 228first strand
Strand 2
A
208 216anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
336 340parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 291first strand
Strand 2
A
294 301anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
40 41anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
9 14anti-parallel
Strand 4
B
143 148parallel
Strand 5
B
170 176parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
44 46anti-parallel
Strand 3
B
68 69anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
102 109anti-parallel
Strand 3
B
112 116anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 228first strand
Strand 2
B
208 216anti-parallel
Strand 3
B
196 203anti-parallel
Strand 4
B
336 340parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 291first strand
Strand 2
B
294 301anti-parallel
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