Analysis of interatomic Contacts of Structural Units in PDB entry:
3GL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GL3 entry

There are 4 chains in PDB entry 3GL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28GLY 168
B
 LEU 29GLY 169
C
 ASP 30LEU 167
D
 LYS 31LEU 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3GL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 53Right-handed 310
Helix 2
2
A
67 84Right-handed alpha
Helix 3
3
A
98 109Right-handed alpha
Helix 4
4
A
121 127Right-handed alpha
Helix 5
5
A
155 167Right-handed alpha
Helix 6
6
B
50 53Right-handed 310
Helix 7
7
B
66 84Right-handed alpha
Helix 8
8
B
98 109Right-handed alpha
Helix 9
9
B
122 127Right-handed alpha
Helix 10
10
B
152 154Right-handed 310
Helix 11
11
B
155 167Right-handed alpha
Helix 12
12
C
50 53Right-handed 310
Helix 13
13
C
68 84Right-handed alpha
Helix 14
14
C
98 109Right-handed alpha
Helix 15
15
C
121 127Right-handed alpha
Helix 16
16
C
154 167Right-handed alpha
Helix 17
17
D
50 53Right-handed 310
Helix 18
18
D
68 84Right-handed alpha
Helix 19
19
D
98 107Right-handed alpha
Helix 20
20
D
121 127Right-handed alpha
Helix 21
21
D
155 167Right-handed alpha
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There are 8 sheets in PDB entry 3GL3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
46 48anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
88 94parallel
Strand 3
A
56 62parallel
Strand 4
A
134 138anti-parallel
Strand 5
A
144 149anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
46 48anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
88 94parallel
Strand 3
B
56 62parallel
Strand 4
B
134 138anti-parallel
Strand 5
B
144 149anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
46 48anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
88 94parallel
Strand 3
C
56 62parallel
Strand 4
C
134 138anti-parallel
Strand 5
C
144 149anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 41first strand
Strand 2
D
46 48anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 117first strand
Strand 2
D
88 94parallel
Strand 3
D
56 62parallel
Strand 4
D
134 138anti-parallel
Strand 5
D
146 149anti-parallel
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