Analysis of interatomic Contacts of Structural Units in PDB entry:
3GLB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GLB entry

There are 4 chains in PDB entry 3GLB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 89GLU 303
B
 GLN 90LEU 301
C
 SER 89PRO 300
D
 SER 89GLU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3GLB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 103Right-handed 310
Helix 2
2
A
104 116Right-handed alpha
Helix 3
3
A
127 137Right-handed alpha
Helix 4
4
A
172 178Right-handed 310
Helix 5
5
A
183 187Right-handed 310
Helix 6
6
A
202 214Right-handed alpha
Helix 7
7
A
226 237Right-handed alpha
Helix 8
8
A
246 250Right-handed 310
Helix 9
9
A
280 296Right-handed alpha
Helix 10
10
B
98 103Right-handed 310
Helix 11
11
B
104 116Right-handed alpha
Helix 12
12
B
127 137Right-handed alpha
Helix 13
13
B
172 178Right-handed 310
Helix 14
14
B
183 187Right-handed 310
Helix 15
15
B
202 214Right-handed alpha
Helix 16
16
B
226 237Right-handed alpha
Helix 17
17
B
246 250Right-handed 310
Helix 18
18
B
280 299Right-handed alpha
Helix 19
19
C
98 103Right-handed alpha
Helix 20
20
C
104 116Right-handed alpha
Helix 21
21
C
129 137Right-handed alpha
Helix 22
22
C
172 178Right-handed 310
Helix 23
23
C
183 187Right-handed 310
Helix 24
24
C
202 213Right-handed alpha
Helix 25
25
C
226 237Right-handed alpha
Helix 26
26
C
246 250Right-handed 310
Helix 27
27
C
280 295Right-handed alpha
Helix 28
28
D
97 103Right-handed 310
Helix 29
29
D
104 116Right-handed alpha
Helix 30
30
D
127 137Right-handed alpha
Helix 31
31
D
174 178Right-handed 310
Helix 32
32
D
202 213Right-handed alpha
Helix 33
33
D
226 237Right-handed alpha
Helix 34
34
D
246 250Right-handed 310
Helix 35
35
D
280 296Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3GLB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 125first strand
Strand 2
A
90 96parallel
Strand 3
A
142 145parallel
Strand 4
A
266 274anti-parallel
Strand 5
A
154 169anti-parallel
Strand 6
A
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 125first strand
Strand 2
A
90 96parallel
Strand 3
A
142 145parallel
Strand 4
A
266 274anti-parallel
Strand 5
A
154 169anti-parallel
Strand 6
A
255 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
221 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
91 96parallel
Strand 3
B
142 145parallel
Strand 4
B
266 274anti-parallel
Strand 5
B
154 169anti-parallel
Strand 6
B
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
91 96parallel
Strand 3
B
142 145parallel
Strand 4
B
266 274anti-parallel
Strand 5
B
154 169anti-parallel
Strand 6
B
255 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
221 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 125first strand
Strand 2
C
91 96parallel
Strand 3
C
142 145parallel
Strand 4
C
266 274anti-parallel
Strand 5
C
154 169anti-parallel
Strand 6
C
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 125first strand
Strand 2
C
91 96parallel
Strand 3
C
142 145parallel
Strand 4
C
266 274anti-parallel
Strand 5
C
154 169anti-parallel
Strand 6
C
255 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 194first strand
Strand 2
C
221 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 125first strand
Strand 2
D
91 96parallel
Strand 3
D
142 145parallel
Strand 4
D
266 274anti-parallel
Strand 5
D
154 169anti-parallel
Strand 6
D
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 125first strand
Strand 2
D
91 96parallel
Strand 3
D
142 145parallel
Strand 4
D
266 274anti-parallel
Strand 5
D
154 169anti-parallel
Strand 6
D
255 259anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 194first strand
Strand 2
D
221 223parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il