Analysis of interatomic Contacts of Structural Units in PDB entry:
3GLM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GLM entry

There are 4 chains in PDB entry 3GLM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	PHE 586
B	MET 3	PHE 586
C	MET 3	PHE 586
D	MET 3	PHE 586

There are114 helices in PDB entry 3GLM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	11	Right-handed alpha
Helix 2	2	A	24	48	Right-handed alpha
Helix 3	3	A	52	59	Right-handed alpha
Helix 4	4	A	63	72	Right-handed alpha
Helix 5	5	A	117	121	Right-handed 310
Helix 6	6	A	125	141	Right-handed alpha
Helix 7	7	A	154	156	Right-handed 310
Helix 8	8	A	157	162	Right-handed alpha
Helix 9	9	A	169	182	Right-handed alpha
Helix 10	10	A	195	203	Right-handed alpha
Helix 11	11	A	237	247	Right-handed alpha
Helix 12	12	A	257	262	Right-handed alpha
Helix 13	13	A	274	289	Right-handed alpha
Helix 14	14	A	293	298	Right-handed 310
Helix 15	15	A	308	310	Right-handed 310
Helix 16	16	A	311	316	Right-handed alpha
Helix 17	17	A	325	334	Right-handed alpha
Helix 18	18	A	335	338	Right-handed 310
Helix 19	19	A	390	407	Right-handed alpha
Helix 20	20	A	423	429	Right-handed alpha
Helix 21	21	A	430	446	Right-handed alpha
Helix 22	22	A	460	465	Right-handed alpha
Helix 23	23	A	489	505	Right-handed alpha
Helix 24	24	A	513	529	Right-handed alpha
Helix 25	25	A	531	538	Right-handed alpha
Helix 26	26	A	549	562	Right-handed alpha
Helix 27	27	A	570	574	Right-handed 310
Helix 28	28	A	575	586	Right-handed alpha
Helix 29	29	B	6	11	Right-handed alpha
Helix 30	30	B	24	48	Right-handed alpha
Helix 31	31	B	52	59	Right-handed alpha
Helix 32	32	B	63	72	Right-handed alpha
Helix 33	33	B	117	121	Right-handed 310
Helix 34	34	B	125	141	Right-handed alpha
Helix 35	35	B	154	156	Right-handed 310
Helix 36	36	B	157	162	Right-handed alpha
Helix 37	37	B	169	182	Right-handed alpha
Helix 38	38	B	195	203	Right-handed alpha
Helix 39	39	B	237	247	Right-handed alpha
Helix 40	40	B	257	262	Right-handed alpha
Helix 41	41	B	274	289	Right-handed alpha
Helix 42	42	B	293	298	Right-handed 310
Helix 43	43	B	308	310	Right-handed 310
Helix 44	44	B	311	316	Right-handed alpha
Helix 45	45	B	325	334	Right-handed alpha
Helix 46	46	B	335	338	Right-handed 310
Helix 47	47	B	390	407	Right-handed alpha
Helix 48	48	B	423	429	Right-handed alpha
Helix 49	49	B	430	446	Right-handed alpha
Helix 50	50	B	460	465	Right-handed alpha
Helix 51	51	B	489	505	Right-handed alpha
Helix 52	52	B	513	529	Right-handed alpha
Helix 53	53	B	531	538	Right-handed alpha
Helix 54	54	B	546	548	Right-handed 310
Helix 55	55	B	549	562	Right-handed alpha
Helix 56	56	B	570	574	Right-handed 310
Helix 57	57	B	575	586	Right-handed alpha
Helix 58	58	C	6	11	Right-handed alpha
Helix 59	59	C	24	48	Right-handed alpha
Helix 60	60	C	52	59	Right-handed alpha
Helix 61	61	C	63	72	Right-handed alpha
Helix 62	62	C	117	121	Right-handed 310
Helix 63	63	C	125	141	Right-handed alpha
Helix 64	64	C	154	156	Right-handed 310
Helix 65	65	C	157	162	Right-handed alpha
Helix 66	66	C	169	182	Right-handed alpha
Helix 67	67	C	195	203	Right-handed alpha
Helix 68	68	C	237	247	Right-handed alpha
Helix 69	69	C	257	262	Right-handed alpha
Helix 70	70	C	274	289	Right-handed alpha
Helix 71	71	C	293	298	Right-handed 310
Helix 72	72	C	308	310	Right-handed 310
Helix 73	73	C	311	316	Right-handed alpha
Helix 74	74	C	325	334	Right-handed alpha
Helix 75	75	C	335	338	Right-handed 310
Helix 76	76	C	390	408	Right-handed alpha
Helix 77	77	C	423	429	Right-handed alpha
Helix 78	78	C	430	446	Right-handed alpha
Helix 79	79	C	460	465	Right-handed alpha
Helix 80	80	C	489	499	Right-handed alpha
Helix 81	81	C	513	529	Right-handed alpha
Helix 82	82	C	531	538	Right-handed alpha
Helix 83	83	C	546	548	Right-handed 310
Helix 84	84	C	549	562	Right-handed alpha
Helix 85	85	C	570	574	Right-handed 310
Helix 86	86	C	575	586	Right-handed alpha
Helix 87	87	D	6	11	Right-handed alpha
Helix 88	88	D	24	48	Right-handed alpha
Helix 89	89	D	52	59	Right-handed alpha
Helix 90	90	D	63	72	Right-handed alpha
Helix 91	91	D	117	121	Right-handed 310
Helix 92	92	D	125	141	Right-handed alpha
Helix 93	93	D	154	156	Right-handed 310
Helix 94	94	D	157	162	Right-handed alpha
Helix 95	95	D	169	181	Right-handed alpha
Helix 96	96	D	195	203	Right-handed alpha
Helix 97	97	D	237	247	Right-handed alpha
Helix 98	98	D	257	262	Right-handed alpha
Helix 99	99	D	274	289	Right-handed alpha
Helix 100	100	D	293	298	Right-handed 310
Helix 101	101	D	308	310	Right-handed 310
Helix 102	102	D	311	316	Right-handed alpha
Helix 103	103	D	325	334	Right-handed alpha
Helix 104	104	D	335	338	Right-handed 310
Helix 105	105	D	390	407	Right-handed alpha
Helix 106	106	D	423	429	Right-handed alpha
Helix 107	107	D	430	446	Right-handed alpha
Helix 108	108	D	459	465	Right-handed alpha
Helix 109	109	D	489	504	Right-handed alpha
Helix 110	110	D	513	529	Right-handed alpha
Helix 111	111	D	531	538	Right-handed alpha
Helix 112	112	D	549	562	Right-handed alpha
Helix 113	113	D	570	574	Right-handed 310
Helix 114	114	D	575	586	Right-handed alpha

There are 24 sheets in PDB entry 3GLM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	96	103	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	144	148	parallel
Strand 5	A	185	189	parallel
Strand 6	A	206	210	parallel
Strand 7	A	270	272	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	214	216	parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	350	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	411	415	parallel
Strand 5	A	449	453	parallel
Strand 6	A	474	479	parallel
Strand 7	A	543	544	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	383	385	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	419	420	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	458	first strand
Strand 2	A	484	486	parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	96	103	anti-parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	144	148	parallel
Strand 5	B	185	189	parallel
Strand 6	B	206	210	parallel
Strand 7	B	270	272	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	214	216	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	350	357	anti-parallel
Strand 3	B	360	367	anti-parallel
Strand 4	B	411	415	parallel
Strand 5	B	449	453	parallel
Strand 6	B	474	479	parallel
Strand 7	B	543	544	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	383	385	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	419	420	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	458	first strand
Strand 2	B	484	486	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	96	103	anti-parallel
Strand 3	C	106	113	anti-parallel
Strand 4	C	144	148	parallel
Strand 5	C	185	189	parallel
Strand 6	C	206	210	parallel
Strand 7	C	270	272	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	214	216	parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	350	357	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	411	415	parallel
Strand 5	C	449	453	parallel
Strand 6	C	474	479	parallel
Strand 7	C	543	544	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	373	first strand
Strand 2	C	383	385	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	419	420	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	458	first strand
Strand 2	C	484	486	parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	96	103	anti-parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	144	148	parallel
Strand 5	D	185	189	parallel
Strand 6	D	206	210	parallel
Strand 7	D	270	272	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	214	216	parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	360	367	anti-parallel
Strand 4	D	411	415	parallel
Strand 5	D	449	453	parallel
Strand 6	D	474	479	parallel
Strand 7	D	543	544	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	373	first strand
Strand 2	D	383	385	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	419	420	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	458	first strand
Strand 2	D	484	486	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GLM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GLM