Analysis of interatomic Contacts of Structural Units in PDB entry:
3GM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GM5 entry

There is 1 chain in PDB entry 3GM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3GM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
20 32Right-handed alpha
Helix 3
3
A
44 49Right-handed alpha
Helix 4
4
A
83 93Right-handed alpha
Helix 5
5
A
105 116Right-handed alpha
Helix 6
6
A
136 141Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3GM5.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
12 17parallel
Strand 5
A
95 102anti-parallel
Strand 6
A
143 149parallel
Strand 7
A
129 134anti-parallel
Strand 8
A
120 126anti-parallel
Strand 9
A
51 52anti-parallel
Strand 10
A
55 56anti-parallel
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