Analysis of interatomic Contacts of Structural Units in PDB entry:
3GM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GM8 entry

There is 1 chain in PDB entry 3GM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20VAL 814
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3GM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 42Right-handed 310
Helix 2
2
A
58 63Right-handed 310
Helix 3
3
A
94 98Right-handed 310
Helix 4
4
A
136 139Right-handed 310
Helix 5
5
A
313 317Right-handed 310
Helix 6
6
A
321 335Right-handed alpha
Helix 7
7
A
348 359Right-handed alpha
Helix 8
8
A
378 381Right-handed 310
Helix 9
9
A
382 399Right-handed alpha
Helix 10
10
A
417 432Right-handed alpha
Helix 11
11
A
465 470Right-handed 310
Helix 12
12
A
472 481Right-handed alpha
Helix 13
13
A
508 512Right-handed alpha
Helix 14
14
A
526 530Right-handed 310
Helix 15
15
A
542 548Right-handed 310
Helix 16
16
A
563 574Right-handed alpha
Helix 17
17
A
611 622Right-handed alpha
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There are 11 sheets in PDB entry 3GM8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
170 175anti-parallel
Strand 3
A
100 105anti-parallel
Strand 4
A
131 134anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
29 33anti-parallel
Strand 3
A
82 91anti-parallel
Strand 4
A
143 152anti-parallel
Strand 5
A
112 116anti-parallel
Strand 6
A
119 124anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
196 203anti-parallel
Strand 3
A
242 249anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 234first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
262 270anti-parallel
Strand 4
A
273 282anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
294 297anti-parallel
Strand 3
A
300 301anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 309first strand
Strand 2
A
339 342parallel
Strand 3
A
361 365parallel
Strand 4
A
404 411parallel
Strand 5
A
437 440parallel
Strand 6
A
461 464parallel
Strand 7
A
485 488parallel
Strand 8
A
577 582parallel
Strand 9
A
304 309parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 507first strand
Strand 2
A
558 559parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 630first strand
Strand 2
A
642 649anti-parallel
Strand 3
A
673 678anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 667first strand
Strand 2
A
653 658anti-parallel
Strand 3
A
683 690anti-parallel
Strand 4
A
693 701anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 713first strand
Strand 2
A
726 734anti-parallel
Strand 3
A
782 789anti-parallel
Strand 4
A
755 761anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 777first strand
Strand 2
A
746 752anti-parallel
Strand 3
A
795 801anti-parallel
Strand 4
A
808 813anti-parallel
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