Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GMA entry

There are 2 chains in PDB entry 3GMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3PHE 586
B
 MET 3PHE 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3GMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
24 48Right-handed alpha
Helix 3
3
A
52 59Right-handed alpha
Helix 4
4
A
63 72Right-handed alpha
Helix 5
5
A
117 121Right-handed 310
Helix 6
6
A
125 141Right-handed alpha
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
157 162Right-handed alpha
Helix 9
9
A
169 181Right-handed alpha
Helix 10
10
A
195 203Right-handed alpha
Helix 11
11
A
236 251Right-handed alpha
Helix 12
12
A
257 262Right-handed alpha
Helix 13
13
A
274 289Right-handed alpha
Helix 14
14
A
293 298Right-handed 310
Helix 15
15
A
308 310Right-handed 310
Helix 16
16
A
311 316Right-handed alpha
Helix 17
17
A
325 334Right-handed alpha
Helix 18
18
A
335 338Right-handed 310
Helix 19
19
A
390 407Right-handed alpha
Helix 20
20
A
423 429Right-handed alpha
Helix 21
21
A
430 446Right-handed alpha
Helix 22
22
A
460 465Right-handed alpha
Helix 23
23
A
489 499Right-handed alpha
Helix 24
24
A
513 529Right-handed alpha
Helix 25
25
A
531 538Right-handed alpha
Helix 26
26
A
546 548Right-handed 310
Helix 27
27
A
549 562Right-handed alpha
Helix 28
28
A
570 574Right-handed 310
Helix 29
29
A
575 586Right-handed alpha
Helix 30
30
B
6 11Right-handed alpha
Helix 31
31
B
24 48Right-handed alpha
Helix 32
32
B
52 59Right-handed alpha
Helix 33
33
B
63 72Right-handed alpha
Helix 34
34
B
117 121Right-handed 310
Helix 35
35
B
125 141Right-handed alpha
Helix 36
36
B
154 156Right-handed 310
Helix 37
37
B
157 162Right-handed alpha
Helix 38
38
B
169 181Right-handed alpha
Helix 39
39
B
195 203Right-handed alpha
Helix 40
40
B
233 251Right-handed alpha
Helix 41
41
B
257 262Right-handed alpha
Helix 42
42
B
274 289Right-handed alpha
Helix 43
43
B
293 298Right-handed 310
Helix 44
44
B
308 310Right-handed 310
Helix 45
45
B
311 316Right-handed alpha
Helix 46
46
B
325 334Right-handed alpha
Helix 47
47
B
335 338Right-handed 310
Helix 48
48
B
390 407Right-handed alpha
Helix 49
49
B
423 429Right-handed alpha
Helix 50
50
B
430 446Right-handed alpha
Helix 51
51
B
460 465Right-handed alpha
Helix 52
52
B
489 499Right-handed alpha
Helix 53
53
B
500 505Right-handed alpha
Helix 54
54
B
513 529Right-handed alpha
Helix 55
55
B
531 538Right-handed alpha
Helix 56
56
B
546 548Right-handed 310
Helix 57
57
B
549 562Right-handed alpha
Helix 58
58
B
570 574Right-handed 310
Helix 59
59
B
575 586Right-handed alpha
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There are 12 sheets in PDB entry 3GMA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
96 103anti-parallel
Strand 3
A
106 113anti-parallel
Strand 4
A
144 148parallel
Strand 5
A
185 189parallel
Strand 6
A
206 210parallel
Strand 7
A
270 272parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
214 216parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
350 357anti-parallel
Strand 3
A
360 367anti-parallel
Strand 4
A
411 415parallel
Strand 5
A
449 453parallel
Strand 6
A
474 479parallel
Strand 7
A
543 544parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
384 385anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
419 420parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
484 486parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
96 103anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
144 148parallel
Strand 5
B
185 189parallel
Strand 6
B
206 210parallel
Strand 7
B
270 272parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
214 216parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 341first strand
Strand 2
B
350 357anti-parallel
Strand 3
B
360 367anti-parallel
Strand 4
B
411 415parallel
Strand 5
B
449 453parallel
Strand 6
B
474 479parallel
Strand 7
B
543 544parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
383 385anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 389first strand
Strand 2
B
419 420parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 458first strand
Strand 2
B
484 486parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il