Analysis of interatomic Contacts of Structural Units in PDB entry:
3GME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GME entry

There are 2 chains in PDB entry 3GME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 545
D
 GLY 1039PRO 1059
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 70Right-handed 310
Helix 2
2
A
85 100Right-handed alpha
Helix 3
3
A
101 103Right-handed 310
Helix 4
4
A
125 142Right-handed alpha
Helix 5
5
A
197 212Right-handed alpha
Helix 6
6
A
212 227Right-handed alpha
Helix 7
7
A
239 244Right-handed alpha
Helix 8
8
A
262 267Right-handed alpha
Helix 9
9
A
298 312Right-handed alpha
Helix 10
10
A
383 387Right-handed 310
Helix 11
11
A
399 412Right-handed alpha
Helix 12
12
A
437 454Right-handed alpha
Helix 13
13
A
482 489Right-handed alpha
Helix 14
14
A
515 541Right-handed alpha
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There are 3 sheets in PDB entry 3GME. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
29 35anti-parallel
Strand 4
A
38 46anti-parallel
Strand 5
A
111 119anti-parallel
Strand 6
A
59 65parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
177 181anti-parallel
Strand 4
A
186 196anti-parallel
Strand 5
A
502 509anti-parallel
Strand 6
A
491 497anti-parallel
Strand 7
A
462 471anti-parallel
Strand 8
A
474 479anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 381first strand
Strand 2
A
424 433parallel
Strand 3
A
348 357anti-parallel
Strand 4
A
339 345anti-parallel
Strand 5
A
327 331anti-parallel
Strand 6
D
1048 1052anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il