Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GMG entry

There are 2 chains in PDB entry 3GMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 149VAL 291
B
 ALA 149VAL 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3GMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
149 158Right-handed alpha
Helix 2
2
A
180 194Right-handed alpha
Helix 3
3
A
241 250Right-handed alpha
Helix 4
4
A
254 262Right-handed alpha
Helix 5
5
B
149 158Right-handed alpha
Helix 6
6
B
180 194Right-handed alpha
Helix 7
7
B
241 250Right-handed alpha
Helix 8
8
B
255 261Right-handed alpha
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There are 6 sheets in PDB entry 3GMG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
198 202anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
163 173anti-parallel
Strand 5
A
265 276anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
198 202anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
163 173anti-parallel
Strand 5
B
289 290anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
222 225anti-parallel
Strand 3
A
228 230anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
B
163 173anti-parallel
Strand 3
B
234 239anti-parallel
Strand 4
B
198 202anti-parallel
Strand 5
B
207 209anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
B
163 173anti-parallel
Strand 3
B
265 276anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
222 225anti-parallel
Strand 3
B
228 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il