Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GMH entry

There are 7 chains in PDB entry 3GMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	PRO 202
B	GLY 9	VAL 203
C	SER 10	ASN 204
D	HIS 7	VAL 203
E	SER 10	ASN 204
F	GLY 9	VAL 203
G	SER 10	ARG 117

There are 49 helices in PDB entry 3GMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	34	Right-handed alpha
Helix 2	2	A	39	41	Right-handed 310
Helix 3	3	A	58	79	Right-handed alpha
Helix 4	4	A	120	138	Right-handed alpha
Helix 5	5	B	16	35	Right-handed alpha
Helix 6	6	B	58	77	Right-handed alpha
Helix 7	7	B	120	140	Right-handed alpha
Helix 8	8	B	164	168	Right-handed 310
Helix 9	9	C	12	34	Right-handed alpha
Helix 10	10	C	39	41	Right-handed 310
Helix 11	11	C	58	79	Right-handed alpha
Helix 12	12	C	120	138	Right-handed alpha
Helix 13	13	D	16	35	Right-handed alpha
Helix 14	14	D	58	77	Right-handed alpha
Helix 15	15	D	120	140	Right-handed alpha
Helix 16	16	D	164	168	Right-handed 310
Helix 17	17	E	12	34	Right-handed alpha
Helix 18	18	E	39	41	Right-handed 310
Helix 19	19	E	58	79	Right-handed alpha
Helix 20	20	E	120	138	Right-handed alpha
Helix 21	21	F	16	35	Right-handed alpha
Helix 22	22	F	58	77	Right-handed alpha
Helix 23	23	F	120	140	Right-handed alpha
Helix 24	24	F	164	168	Right-handed 310
Helix 25	25	G	12	34	Right-handed alpha
Helix 26	26	G	39	41	Right-handed 310
Helix 27	27	G	58	79	Right-handed alpha
Helix 28	28	G	120	138	Right-handed alpha
Helix 29	29	G	139	141	Right-handed 310
Helix 30	30	H	16	35	Right-handed alpha
Helix 31	31	H	58	77	Right-handed alpha
Helix 32	32	H	120	140	Right-handed alpha
Helix 33	33	H	164	168	Right-handed 310
Helix 34	34	I	12	37	Right-handed alpha
Helix 35	35	I	39	41	Right-handed 310
Helix 36	36	I	58	79	Right-handed alpha
Helix 37	37	I	120	142	Right-handed alpha
Helix 38	38	J	16	35	Right-handed alpha
Helix 39	39	J	58	77	Right-handed alpha
Helix 40	40	J	120	140	Right-handed alpha
Helix 41	41	J	164	168	Right-handed 310
Helix 42	42	K	12	34	Right-handed alpha
Helix 43	43	K	39	41	Right-handed 310
Helix 44	44	K	58	79	Right-handed alpha
Helix 45	45	K	120	138	Right-handed alpha
Helix 46	46	L	16	35	Right-handed alpha
Helix 47	47	L	58	77	Right-handed alpha
Helix 48	48	L	120	140	Right-handed alpha
Helix 49	49	L	164	168	Right-handed 310

There are 22 sheets in PDB entry 3GMH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	51	56	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	187	first strand
Strand 2	A	191	200	anti-parallel
Strand 3	A	96	106	anti-parallel
Strand 4	A	81	90	anti-parallel
Strand 5	A	149	157	anti-parallel
Strand 6	D	197	199	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	96	106	parallel
Strand 3	B	81	90	anti-parallel
Strand 4	B	149	157	anti-parallel
Strand 5	B	183	192	parallel
Strand 6	B	173	175	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	43	48	anti-parallel
Strand 3	H	43	48	anti-parallel
Strand 4	H	51	56	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	81	90	anti-parallel
Strand 4	C	96	106	anti-parallel
Strand 5	C	191	200	anti-parallel
Strand 6	C	178	187	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	51	56	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	96	106	parallel
Strand 3	D	81	90	anti-parallel
Strand 4	D	149	157	anti-parallel
Strand 5	D	183	192	parallel
Strand 6	D	173	175	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	56	first strand
Strand 2	D	43	48	anti-parallel
Strand 3	L	43	48	anti-parallel
Strand 4	L	51	56	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	48	first strand
Strand 2	E	51	56	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	157	first strand
Strand 2	E	81	90	anti-parallel
Strand 3	E	96	106	anti-parallel
Strand 4	E	191	200	anti-parallel
Strand 5	E	178	187	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	15	first strand
Strand 2	F	96	106	parallel
Strand 3	F	81	90	anti-parallel
Strand 4	F	149	157	anti-parallel
Strand 5	F	183	192	parallel
Strand 6	F	173	175	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	51	56	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	48	first strand
Strand 2	G	51	56	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	187	first strand
Strand 2	G	191	200	anti-parallel
Strand 3	G	96	106	anti-parallel
Strand 4	G	81	90	anti-parallel
Strand 5	G	149	157	anti-parallel
Strand 6	J	197	198	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	15	first strand
Strand 2	H	96	106	parallel
Strand 3	H	81	90	anti-parallel
Strand 4	H	149	157	anti-parallel
Strand 5	H	183	192	parallel
Strand 6	H	173	175	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	199	first strand
Strand 2	I	149	157	anti-parallel
Strand 3	I	81	90	anti-parallel
Strand 4	I	96	106	anti-parallel
Strand 5	I	191	200	anti-parallel
Strand 6	I	178	187	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	48	first strand
Strand 2	I	51	56	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	15	first strand
Strand 2	J	96	106	parallel
Strand 3	J	81	90	anti-parallel
Strand 4	J	149	157	anti-parallel
Strand 5	J	183	192	parallel
Strand 6	J	173	175	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	48	first strand
Strand 2	J	51	56	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	48	first strand
Strand 2	K	51	56	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	157	first strand
Strand 2	K	81	90	anti-parallel
Strand 3	K	96	106	anti-parallel
Strand 4	K	191	200	anti-parallel
Strand 5	K	178	187	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	15	first strand
Strand 2	L	96	106	parallel
Strand 3	L	81	90	anti-parallel
Strand 4	L	149	157	anti-parallel
Strand 5	L	183	192	parallel
Strand 6	L	173	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMH