Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GMI entry

There is 1 chain in PDB entry 3GMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1LYS 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3GMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 27Right-handed alpha
Helix 2
2
A
29 48Right-handed alpha
Helix 3
3
A
63 75Right-handed alpha
Helix 4
4
A
99 111Right-handed alpha
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
125 141Right-handed alpha
Helix 7
7
A
152 164Right-handed alpha
Helix 8
8
A
189 191Right-handed 310
Helix 9
9
A
192 208Right-handed alpha
Helix 10
10
A
226 236Right-handed alpha
Helix 11
11
A
238 246Right-handed 310
Helix 12
12
A
247 260Right-handed alpha
Helix 13
13
A
263 267Right-handed 310
Helix 14
14
A
271 282Right-handed alpha
Helix 15
15
A
283 287Right-handed 310
Helix 16
16
A
289 300Right-handed alpha
Helix 17
17
A
304 312Right-handed alpha
Helix 18
18
A
317 331Right-handed alpha
Helix 19
19
A
333 344Right-handed alpha
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There are 3 sheets in PDB entry 3GMI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
78 83parallel
Strand 3
A
114 117parallel
Strand 4
A
350 353anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 149first strand
Strand 2
A
215 220parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
183 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il