Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GMS entry

There is 1 chain in PDB entry 3GMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed alpha
Helix 2
2
A
43 48Right-handed alpha
Helix 3
3
A
49 52Right-handed 310
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
124 136Right-handed alpha
Helix 7
7
A
153 167Right-handed alpha
Helix 8
8
A
179 187Right-handed alpha
Helix 9
9
A
198 207Right-handed alpha
Helix 10
10
A
220 230Right-handed alpha
Helix 11
11
A
249 256Right-handed alpha
Helix 12
12
A
265 273Right-handed alpha
Helix 13
13
A
274 291Right-handed alpha
Helix 14
14
A
307 317Right-handed alpha
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There are 4 sheets in PDB entry 3GMS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
18 24anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
87 90anti-parallel
Strand 5
A
108 110anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
324 328anti-parallel
Strand 4
A
299 304parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
169 174parallel
Strand 3
A
145 148parallel
Strand 4
A
212 217parallel
Strand 5
A
231 239parallel
Strand 6
A
260 263parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il