Analysis of interatomic Contacts of Structural Units in PDB entry:
3GMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GMW entry

There are 4 chains in PDB entry 3GMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28TRP 288
B
 PHE 4THR 157
C
 GLU 28TRP 288
D
 SER 2THR 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 41Right-handed alpha
Helix 2
2
A
71 86Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
108 113Right-handed 310
Helix 5
5
A
119 129Right-handed alpha
Helix 6
6
A
131 143Right-handed alpha
Helix 7
7
A
144 155Right-handed alpha
Helix 8
8
A
167 171Right-handed 310
Helix 9
9
A
182 196Right-handed alpha
Helix 10
10
A
200 213Right-handed alpha
Helix 11
11
A
220 225Right-handed 310
Helix 12
12
A
269 287Right-handed alpha
Helix 13
13
B
5 12Right-handed alpha
Helix 14
14
B
17 26Right-handed alpha
Helix 15
15
B
26 30Right-handed alpha
Helix 16
16
B
35 38Right-handed 310
Helix 17
17
B
81 87Right-handed alpha
Helix 18
18
B
93 101Right-handed alpha
Helix 19
19
B
102 104Right-handed 310
Helix 20
20
C
28 41Right-handed alpha
Helix 21
21
C
71 86Right-handed alpha
Helix 22
22
C
98 102Right-handed 310
Helix 23
23
C
108 113Right-handed 310
Helix 24
24
C
119 129Right-handed alpha
Helix 25
25
C
131 143Right-handed alpha
Helix 26
26
C
144 154Right-handed alpha
Helix 27
27
C
167 171Right-handed 310
Helix 28
28
C
182 196Right-handed alpha
Helix 29
29
C
200 213Right-handed alpha
Helix 30
30
C
220 225Right-handed 310
Helix 31
31
C
269 287Right-handed alpha
Helix 32
32
D
5 12Right-handed alpha
Helix 33
33
D
17 26Right-handed alpha
Helix 34
34
D
26 30Right-handed alpha
Helix 35
35
D
34 38Right-handed 310
Helix 36
36
D
81 87Right-handed alpha
Helix 37
37
D
93 101Right-handed alpha
Helix 38
38
D
102 104Right-handed 310
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There are 7 sheets in PDB entry 3GMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 237first strand
Strand 2
A
243 250anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
43 50anti-parallel
Strand 5
A
56 60anti-parallel
Strand 6
C
56 60anti-parallel
Strand 7
C
43 50anti-parallel
Strand 8
C
257 264anti-parallel
Strand 9
C
243 250anti-parallel
Strand 10
C
230 237anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
41 44anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
64 70anti-parallel
Strand 5
B
106 112anti-parallel
Strand 6
B
123 129anti-parallel
Strand 7
B
138 144anti-parallel
Strand 8
B
147 154anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
117 118anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
41 44anti-parallel
Strand 3
D
53 58anti-parallel
Strand 4
D
64 70anti-parallel
Strand 5
D
106 112anti-parallel
Strand 6
D
123 129anti-parallel
Strand 7
D
138 144anti-parallel
Strand 8
D
147 154anti-parallel
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