Analysis of interatomic Contacts of Structural Units in PDB entry:
3GN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GN4 entry

There are 6 chains in PDB entry 3GN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 771LEU 913
B
 GLN 3SER 147
D
 GLN 3SER 147
E
 ASP 775LEU 910
F
 ASP 2SER 147
H
 GLN 3SER 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3GN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
773 849Right-handed alpha
Helix 2
2
A
865 886Right-handed alpha
Helix 3
3
A
891 913Right-handed alpha
Helix 4
4
B
5 20Right-handed alpha
Helix 5
5
B
28 39Right-handed alpha
Helix 6
6
B
44 56Right-handed alpha
Helix 7
7
B
65 72Right-handed alpha
Helix 8
8
B
79 93Right-handed alpha
Helix 9
9
B
101 112Right-handed alpha
Helix 10
10
B
117 129Right-handed alpha
Helix 11
11
B
138 147Right-handed alpha
Helix 12
12
D
5 20Right-handed alpha
Helix 13
13
D
30 39Right-handed alpha
Helix 14
14
D
44 53Right-handed alpha
Helix 15
15
D
65 75Right-handed alpha
Helix 16
16
D
76 78Right-handed 310
Helix 17
17
D
81 91Right-handed alpha
Helix 18
18
D
102 112Right-handed alpha
Helix 19
19
D
117 129Right-handed alpha
Helix 20
20
D
138 146Right-handed alpha
Helix 21
21
E
775 847Right-handed alpha
Helix 22
22
E
867 888Right-handed alpha
Helix 23
23
E
891 901Right-handed alpha
Helix 24
24
E
903 909Right-handed alpha
Helix 25
25
F
5 20Right-handed alpha
Helix 26
26
F
28 39Right-handed alpha
Helix 27
27
F
44 56Right-handed alpha
Helix 28
28
F
64 72Right-handed alpha
Helix 29
29
F
79 93Right-handed alpha
Helix 30
30
F
101 112Right-handed alpha
Helix 31
31
F
117 129Right-handed alpha
Helix 32
32
F
138 146Right-handed alpha
Helix 33
33
H
5 20Right-handed alpha
Helix 34
34
H
29 39Right-handed alpha
Helix 35
35
H
44 56Right-handed alpha
Helix 36
36
H
65 78Right-handed alpha
Helix 37
37
H
82 91Right-handed alpha
Helix 38
38
H
102 112Right-handed alpha
Helix 39
39
H
117 127Right-handed alpha
Helix 40
40
H
137 145Right-handed alpha
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There are 7 sheets in PDB entry 3GN4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
63 64anti-parallel
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There are 1 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 28first strand
Strand 2
D
62 64anti-parallel
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There are 1 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 137first strand
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There are 1 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
136 137first strand
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
26 28first strand
Strand 2
H
62 64anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
100 101first strand
Strand 2
H
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il