Analysis of interatomic Contacts of Structural Units in PDB entry:
3GN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GN6 entry

There are 4 chains in PDB entry 3GN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 21	ASP 320
B	PHE 21	ASP 320
C	ALA 20	ASP 320
D	PHE 21	ASP 320

There are 57 helices in PDB entry 3GN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	31	Right-handed alpha
Helix 2	2	A	48	68	Right-handed alpha
Helix 3	3	A	85	89	Right-handed 310
Helix 4	4	A	91	95	Right-handed 310
Helix 5	5	A	100	108	Right-handed alpha
Helix 6	6	A	123	130	Right-handed alpha
Helix 7	7	A	131	140	Right-handed alpha
Helix 8	8	A	141	144	Right-handed 310
Helix 9	9	A	178	188	Right-handed alpha
Helix 10	10	A	192	196	Right-handed 310
Helix 11	11	A	210	228	Right-handed alpha
Helix 12	12	A	278	286	Right-handed alpha
Helix 13	13	A	288	300	Right-handed alpha
Helix 14	14	B	25	31	Right-handed alpha
Helix 15	15	B	48	50	Right-handed 310
Helix 16	16	B	51	67	Right-handed alpha
Helix 17	17	B	85	89	Right-handed 310
Helix 18	18	B	91	95	Right-handed 310
Helix 19	19	B	100	108	Right-handed alpha
Helix 20	20	B	123	131	Right-handed alpha
Helix 21	21	B	131	140	Right-handed alpha
Helix 22	22	B	141	144	Right-handed 310
Helix 23	23	B	178	188	Right-handed alpha
Helix 24	24	B	192	196	Right-handed 310
Helix 25	25	B	210	228	Right-handed alpha
Helix 26	26	B	278	286	Right-handed alpha
Helix 27	27	B	288	301	Right-handed alpha
Helix 28	28	C	25	31	Right-handed alpha
Helix 29	29	C	48	50	Right-handed 310
Helix 30	30	C	51	67	Right-handed alpha
Helix 31	31	C	85	89	Right-handed 310
Helix 32	32	C	91	95	Right-handed 310
Helix 33	33	C	100	108	Right-handed alpha
Helix 34	34	C	123	130	Right-handed alpha
Helix 35	35	C	131	140	Right-handed alpha
Helix 36	36	C	141	143	Right-handed 310
Helix 37	37	C	149	151	Right-handed 310
Helix 38	38	C	178	188	Right-handed alpha
Helix 39	39	C	192	196	Right-handed 310
Helix 40	40	C	210	228	Right-handed alpha
Helix 41	41	C	278	286	Right-handed alpha
Helix 42	42	C	288	301	Right-handed alpha
Helix 43	43	D	25	31	Right-handed alpha
Helix 44	44	D	48	50	Right-handed 310
Helix 45	45	D	51	67	Right-handed alpha
Helix 46	46	D	85	89	Right-handed 310
Helix 47	47	D	91	95	Right-handed 310
Helix 48	48	D	100	108	Right-handed alpha
Helix 49	49	D	123	130	Right-handed alpha
Helix 50	50	D	131	140	Right-handed alpha
Helix 51	51	D	141	144	Right-handed 310
Helix 52	52	D	178	188	Right-handed alpha
Helix 53	53	D	192	196	Right-handed 310
Helix 54	54	D	210	219	Right-handed alpha
Helix 55	55	D	219	228	Right-handed alpha
Helix 56	56	D	278	286	Right-handed alpha
Helix 57	57	D	288	300	Right-handed alpha

There are 9 sheets in PDB entry 3GN6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	160	171	anti-parallel
Strand 3	A	39	47	anti-parallel
Strand 4	A	113	121	anti-parallel
Strand 5	A	72	83	anti-parallel
Strand 6	A	309	318	anti-parallel
Strand 7	A	198	207	anti-parallel
Strand 8	A	304	307	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	160	171	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	267	276	anti-parallel
Strand 5	A	198	207	anti-parallel
Strand 6	A	304	307	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	160	171	anti-parallel
Strand 3	B	39	47	anti-parallel
Strand 4	B	113	121	anti-parallel
Strand 5	B	72	83	anti-parallel
Strand 6	B	309	318	anti-parallel
Strand 7	B	198	207	anti-parallel
Strand 8	B	304	307	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	160	171	anti-parallel
Strand 3	B	254	260	anti-parallel
Strand 4	B	267	276	anti-parallel
Strand 5	B	198	207	anti-parallel
Strand 6	B	304	307	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	160	171	anti-parallel
Strand 3	C	39	47	anti-parallel
Strand 4	C	113	121	anti-parallel
Strand 5	C	72	83	anti-parallel
Strand 6	C	309	318	anti-parallel
Strand 7	C	198	207	anti-parallel
Strand 8	C	304	307	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	160	171	anti-parallel
Strand 3	C	254	260	anti-parallel
Strand 4	C	267	276	anti-parallel
Strand 5	C	198	207	anti-parallel
Strand 6	C	304	307	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	153	156	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	160	171	anti-parallel
Strand 3	D	39	47	anti-parallel
Strand 4	D	113	121	anti-parallel
Strand 5	D	72	83	anti-parallel
Strand 6	D	309	318	anti-parallel
Strand 7	D	198	207	anti-parallel
Strand 8	D	304	307	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	160	171	anti-parallel
Strand 3	D	254	260	anti-parallel
Strand 4	D	267	276	anti-parallel
Strand 5	D	198	207	anti-parallel
Strand 6	D	304	307	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GN6