Analysis of interatomic Contacts of Structural Units in PDB entry:
3GNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GNE entry

There are 2 chains in PDB entry 3GNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLU 244
B
 ASN 2TYR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3GNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
16 19Right-handed 310
Helix 3
3
A
121 123Right-handed 310
Helix 4
4
B
8 12Right-handed 310
Helix 5
5
B
16 19Right-handed 310
Helix 6
6
B
121 123Right-handed 310
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There are 8 sheets in PDB entry 3GNE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
231 241anti-parallel
Strand 3
A
37 44anti-parallel
Strand 4
A
30 34anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
231 241anti-parallel
Strand 3
A
72 80anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
186 192anti-parallel
Strand 6
A
195 202anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
212 221anti-parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
112 119anti-parallel
Strand 6
A
125 130anti-parallel
Strand 7
A
149 151anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
181 182anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
231 241anti-parallel
Strand 3
B
37 44anti-parallel
Strand 4
B
30 34anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
231 241anti-parallel
Strand 3
B
72 80anti-parallel
Strand 4
B
166 173anti-parallel
Strand 5
B
186 192anti-parallel
Strand 6
B
195 202anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
59 63anti-parallel
Strand 3
B
212 221anti-parallel
Strand 4
B
91 99anti-parallel
Strand 5
B
112 119anti-parallel
Strand 6
B
125 130anti-parallel
Strand 7
B
149 151anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
181 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il