Analysis of interatomic Contacts of Structural Units in PDB entry:
3GNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GNI entry

There are 2 chains in PDB entry 3GNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 336
B
 ALA -15PHE 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3GNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 28Right-handed alpha
Helix 2
2
A
32 56Right-handed alpha
Helix 3
3
A
63 78Right-handed alpha
Helix 4
4
A
78 86Right-handed alpha
Helix 5
5
A
87 90Right-handed 310
Helix 6
6
A
91 107Right-handed alpha
Helix 7
7
A
114 123Right-handed alpha
Helix 8
8
A
124 133Right-handed alpha
Helix 9
9
A
134 136Right-handed 310
Helix 10
10
A
139 151Right-handed alpha
Helix 11
11
A
153 162Right-handed alpha
Helix 12
12
A
164 167Right-handed 310
Helix 13
13
A
168 173Right-handed alpha
Helix 14
14
A
177 194Right-handed alpha
Helix 15
15
A
195 206Right-handed alpha
Helix 16
16
A
206 218Right-handed alpha
Helix 17
17
A
222 238Right-handed alpha
Helix 18
18
A
239 241Right-handed 310
Helix 19
19
A
242 250Right-handed alpha
Helix 20
20
A
252 263Right-handed alpha
Helix 21
21
A
267 284Right-handed alpha
Helix 22
22
A
288 298Right-handed alpha
Helix 23
23
A
298 308Right-handed alpha
Helix 24
24
A
316 332Right-handed alpha
Helix 25
25
B
-10 -5Right-handed alpha
Helix 26
26
B
65 67Right-handed 310
Helix 27
27
B
105 107Right-handed 310
Helix 28
28
B
108 125Right-handed alpha
Helix 29
29
B
154 162Right-handed alpha
Helix 30
30
B
168 189Right-handed alpha
Helix 31
31
B
197 199Right-handed 310
Helix 32
32
B
213 217Right-handed 310
Helix 33
33
B
240 244Right-handed 310
Helix 34
34
B
245 250Right-handed alpha
Helix 35
35
B
258 275Right-handed alpha
Helix 36
36
B
286 291Right-handed alpha
Helix 37
37
B
349 360Right-handed alpha
Helix 38
38
B
369 374Right-handed alpha
Helix 39
39
B
375 382Right-handed 310
Helix 40
40
B
389 394Right-handed alpha
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There are 4 sheets in PDB entry 3GNI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 78first strand
Strand 2
B
83 90anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
142 148anti-parallel
Strand 5
B
133 139anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
218 219anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
209 211anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
225 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il