Analysis of interatomic Contacts of Structural Units in PDB entry:
3GNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GNL entry

There are 2 chains in PDB entry 3GNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9GLY 242
B
 GLN 11LYS 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3GNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
58 72Right-handed alpha
Helix 4
4
A
84 89Right-handed 310
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
104 115Right-handed alpha
Helix 7
7
A
116 120Right-handed 310
Helix 8
8
A
132 144Right-handed alpha
Helix 9
9
A
175 182Right-handed alpha
Helix 10
10
A
182 189Right-handed alpha
Helix 11
11
A
190 213Right-handed alpha
Helix 12
12
A
218 240Right-handed alpha
Helix 13
13
B
13 21Right-handed alpha
Helix 14
14
B
37 46Right-handed alpha
Helix 15
15
B
60 73Right-handed alpha
Helix 16
16
B
84 89Right-handed 310
Helix 17
17
B
90 94Right-handed 310
Helix 18
18
B
104 115Right-handed alpha
Helix 19
19
B
116 120Right-handed 310
Helix 20
20
B
132 144Right-handed alpha
Helix 21
21
B
175 182Right-handed alpha
Helix 22
22
B
182 189Right-handed alpha
Helix 23
23
B
190 213Right-handed alpha
Helix 24
24
B
218 240Right-handed alpha
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There are 2 sheets in PDB entry 3GNL. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
49 56parallel
Strand 3
A
27 32parallel
Strand 4
A
97 103parallel
Strand 5
A
124 129parallel
Strand 6
A
158 167anti-parallel
Strand 7
A
145 155anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
49 56parallel
Strand 3
B
27 32parallel
Strand 4
B
97 103parallel
Strand 5
B
124 129parallel
Strand 6
B
158 167anti-parallel
Strand 7
B
145 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il