Analysis of interatomic Contacts of Structural Units in PDB entry:
3GNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GNX entry

There are 2 chains in PDB entry 3GNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3ARG 387
E
 TYR 3ARG 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 3GNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
15 19Right-handed alpha
Helix 3
3
A
35 47Right-handed alpha
Helix 4
4
A
55 59Right-handed alpha
Helix 5
5
A
64 83Right-handed alpha
Helix 6
6
A
96 100Right-handed 310
Helix 7
7
A
108 130Right-handed alpha
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
150 173Right-handed alpha
Helix 10
10
A
195 204Right-handed alpha
Helix 11
11
A
208 210Right-handed 310
Helix 12
12
A
217 223Right-handed alpha
Helix 13
13
A
227 238Right-handed alpha
Helix 14
14
A
264 278Right-handed alpha
Helix 15
15
A
295 323Right-handed alpha
Helix 16
16
A
323 333Right-handed alpha
Helix 17
17
A
334 340Right-handed alpha
Helix 18
18
A
346 353Right-handed alpha
Helix 19
19
A
354 357Right-handed 310
Helix 20
20
A
361 368Right-handed alpha
Helix 21
21
A
371 384Right-handed alpha
Helix 22
22
E
6 9Right-handed 310
Helix 23
23
E
15 19Right-handed alpha
Helix 24
24
E
35 47Right-handed alpha
Helix 25
25
E
54 59Right-handed alpha
Helix 26
26
E
64 83Right-handed alpha
Helix 27
27
E
96 100Right-handed 310
Helix 28
28
E
108 130Right-handed alpha
Helix 29
29
E
150 173Right-handed alpha
Helix 30
30
E
195 204Right-handed alpha
Helix 31
31
E
208 210Right-handed 310
Helix 32
32
E
217 223Right-handed alpha
Helix 33
33
E
227 238Right-handed alpha
Helix 34
34
E
264 279Right-handed alpha
Helix 35
35
E
295 323Right-handed alpha
Helix 36
36
E
323 333Right-handed alpha
Helix 37
37
E
334 340Right-handed alpha
Helix 38
38
E
346 353Right-handed alpha
Helix 39
39
E
354 357Right-handed 310
Helix 40
40
E
361 368Right-handed alpha
Helix 41
41
E
371 384Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3GNX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
177 180parallel
Strand 3
A
133 136parallel
Strand 4
A
85 90parallel
Strand 5
A
50 54parallel
Strand 6
A
11 14parallel
Strand 7
A
284 286parallel
Strand 8
A
245 246parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 52first strand
Strand 2
E
11 14parallel
Strand 3
E
284 286parallel
Strand 4
E
245 246parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 90first strand
Strand 2
E
133 137parallel
Strand 3
E
177 181parallel
Strand 4
E
212 214parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 143first strand
Strand 2
E
190 191anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il