Analysis of interatomic Contacts of Structural Units in PDB entry:
3GO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GO4 entry

There is 1 chain in PDB entry 3GO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15PRO 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3GO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 32Right-handed alpha
Helix 2
2
A
37 51Right-handed alpha
Helix 3
3
A
53 75Right-handed alpha
Helix 4
4
A
93 102Right-handed alpha
Helix 5
5
A
113 119Right-handed alpha
Helix 6
6
A
120 125Right-handed alpha
Helix 7
7
A
141 147Right-handed alpha
Helix 8
8
A
148 153Right-handed alpha
Helix 9
9
A
168 172Right-handed 310
Helix 10
10
A
173 176Right-handed 310
Helix 11
11
A
177 187Right-handed alpha
Helix 12
12
A
205 219Right-handed alpha
Helix 13
13
A
227 233Right-handed alpha
Helix 14
14
A
234 236Right-handed 310
Helix 15
15
A
249 251Right-handed 310
Helix 16
16
A
262 266Right-handed 310
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There are 2 sheets in PDB entry 3GO4. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
106 111parallel
Strand 3
A
80 84parallel
Strand 4
A
162 166parallel
Strand 5
A
194 200parallel
Strand 6
A
268 274anti-parallel
Strand 7
A
239 240anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
106 111parallel
Strand 3
A
80 84parallel
Strand 4
A
162 166parallel
Strand 5
A
194 200parallel
Strand 6
A
268 274anti-parallel
Strand 7
A
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il