Analysis of interatomic Contacts of Structural Units in PDB entry:
3GO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GO5 entry

There is 1 chain in PDB entry 3GO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3GO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 37Right-handed 310
Helix 2
2
A
101 103Right-handed 310
Helix 3
3
A
106 110Right-handed 310
Helix 4
4
A
135 143Right-handed alpha
Helix 5
5
A
182 185Right-handed 310
Helix 6
6
A
222 235Right-handed alpha
Helix 7
7
A
246 255Right-handed alpha
Helix 8
8
A
257 271Right-handed alpha
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There are 4 sheets in PDB entry 3GO5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 16first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
28 33anti-parallel
Strand 4
A
57 60parallel
Strand 5
A
44 51anti-parallel
Strand 6
A
7 16anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
84 88anti-parallel
Strand 3
A
72 80anti-parallel
Strand 4
A
116 123anti-parallel
Strand 5
A
129 133anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 163first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
208 212parallel
Strand 5
A
194 203anti-parallel
Strand 6
A
154 163anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
274 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il