Analysis of interatomic Contacts of Structural Units in PDB entry:
3GO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GO7 entry

There are 2 chains in PDB entry 3GO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ASN 299
B
 ALA 13ASN 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3GO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 63Right-handed alpha
Helix 2
2
A
76 89Right-handed alpha
Helix 3
3
A
122 128Right-handed 310
Helix 4
4
A
131 136Right-handed 310
Helix 5
5
A
148 162Right-handed alpha
Helix 6
6
A
176 187Right-handed alpha
Helix 7
7
A
194 200Right-handed alpha
Helix 8
8
A
239 250Right-handed alpha
Helix 9
9
A
258 277Right-handed alpha
Helix 10
10
A
288 298Right-handed alpha
Helix 11
11
B
51 63Right-handed alpha
Helix 12
12
B
76 89Right-handed alpha
Helix 13
13
B
122 128Right-handed 310
Helix 14
14
B
131 136Right-handed alpha
Helix 15
15
B
148 162Right-handed alpha
Helix 16
16
B
176 179Right-handed 310
Helix 17
17
B
180 187Right-handed alpha
Helix 18
18
B
194 199Right-handed alpha
Helix 19
19
B
239 250Right-handed alpha
Helix 20
20
B
258 276Right-handed alpha
Helix 21
21
B
277 279Right-handed 310
Helix 22
22
B
288 298Right-handed alpha
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There are 6 sheets in PDB entry 3GO7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
15 19parallel
Strand 3
A
140 143parallel
Strand 4
A
165 169parallel
Strand 5
A
189 193parallel
Strand 6
A
206 210parallel
Strand 7
A
215 220anti-parallel
Strand 8
A
223 228anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
104 110parallel
Strand 4
A
116 121anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
97 99parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
15 19parallel
Strand 3
B
140 143parallel
Strand 4
B
165 169parallel
Strand 5
B
189 193parallel
Strand 6
B
206 210parallel
Strand 7
B
215 220anti-parallel
Strand 8
B
223 228anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 50first strand
Strand 2
B
23 29anti-parallel
Strand 3
B
104 110parallel
Strand 4
B
116 121anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
97 98parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il