Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOA entry

There are 2 chains in PDB entry 3GOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 387
B
 MSE 1VAL 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 42Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
67 76Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
92 107Right-handed alpha
Helix 7
7
A
147 158Right-handed alpha
Helix 8
8
A
161 183Right-handed alpha
Helix 9
9
A
215 220Right-handed alpha
Helix 10
10
A
234 238Right-handed 310
Helix 11
11
A
253 259Right-handed alpha
Helix 12
12
A
283 296Right-handed alpha
Helix 13
13
A
298 302Right-handed 310
Helix 14
14
A
311 322Right-handed alpha
Helix 15
15
A
324 326Right-handed 310
Helix 16
16
A
327 332Right-handed alpha
Helix 17
17
A
337 342Right-handed alpha
Helix 18
18
A
344 363Right-handed alpha
Helix 19
19
B
26 42Right-handed alpha
Helix 20
20
B
46 50Right-handed 310
Helix 21
21
B
61 65Right-handed 310
Helix 22
22
B
67 76Right-handed alpha
Helix 23
23
B
89 91Right-handed 310
Helix 24
24
B
92 107Right-handed alpha
Helix 25
25
B
133 137Right-handed 310
Helix 26
26
B
145 152Right-handed alpha
Helix 27
27
B
152 159Right-handed alpha
Helix 28
28
B
161 182Right-handed alpha
Helix 29
29
B
215 220Right-handed alpha
Helix 30
30
B
234 238Right-handed 310
Helix 31
31
B
253 260Right-handed alpha
Helix 32
32
B
283 296Right-handed alpha
Helix 33
33
B
298 302Right-handed 310
Helix 34
34
B
311 322Right-handed alpha
Helix 35
35
B
324 326Right-handed 310
Helix 36
36
B
327 332Right-handed alpha
Helix 37
37
B
337 342Right-handed alpha
Helix 38
38
B
344 364Right-handed alpha
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There are 4 sheets in PDB entry 3GOA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
242 252anti-parallel
Strand 3
A
112 119anti-parallel
Strand 4
A
52 56parallel
Strand 5
A
85 88parallel
Strand 6
B
85 88anti-parallel
Strand 7
B
52 56parallel
Strand 8
B
112 119parallel
Strand 9
B
242 252anti-parallel
Strand 10
B
15 16anti-parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
367 374parallel
Strand 3
A
378 385anti-parallel
Strand 4
A
265 274anti-parallel
Strand 5
A
4 11anti-parallel
Strand 6
A
242 252anti-parallel
Strand 7
A
112 119anti-parallel
Strand 8
A
52 56parallel
Strand 9
A
85 88parallel
Strand 10
B
85 88anti-parallel
Strand 11
B
52 56parallel
Strand 12
B
112 119parallel
Strand 13
B
242 252anti-parallel
Strand 14
B
4 11anti-parallel
Strand 15
B
265 274anti-parallel
Strand 16
B
378 385anti-parallel
Strand 17
B
367 374anti-parallel
Strand 18
B
304 307parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
201 204anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 195first strand
Strand 2
B
201 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il