Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOB entry

There are 3 chains in PDB entry 3GOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 342
B
 ALA 2LEU 342
C
 MET 1LEU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3GOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
55 59Right-handed 310
Helix 3
3
A
92 96Right-handed 310
Helix 4
4
A
115 119Right-handed 310
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
127 132Right-handed 310
Helix 7
7
A
147 156Right-handed alpha
Helix 8
8
A
160 165Right-handed alpha
Helix 9
9
A
200 208Right-handed alpha
Helix 10
10
A
275 292Right-handed alpha
Helix 11
11
A
293 303Right-handed alpha
Helix 12
12
A
304 311Right-handed alpha
Helix 13
13
A
318 320Right-handed 310
Helix 14
14
A
321 342Right-handed alpha
Helix 15
15
B
14 18Right-handed 310
Helix 16
16
B
55 59Right-handed 310
Helix 17
17
B
92 96Right-handed 310
Helix 18
18
B
115 119Right-handed 310
Helix 19
19
B
120 124Right-handed 310
Helix 20
20
B
127 132Right-handed 310
Helix 21
21
B
147 156Right-handed alpha
Helix 22
22
B
157 159Right-handed 310
Helix 23
23
B
160 165Right-handed alpha
Helix 24
24
B
165 170Right-handed alpha
Helix 25
25
B
173 177Right-handed 310
Helix 26
26
B
200 207Right-handed alpha
Helix 27
27
B
240 244Right-handed 310
Helix 28
28
B
275 290Right-handed alpha
Helix 29
29
B
292 303Right-handed alpha
Helix 30
30
B
304 311Right-handed alpha
Helix 31
31
B
318 320Right-handed 310
Helix 32
32
B
321 342Right-handed alpha
Helix 33
33
C
14 18Right-handed 310
Helix 34
34
C
55 59Right-handed 310
Helix 35
35
C
92 96Right-handed 310
Helix 36
36
C
115 119Right-handed 310
Helix 37
37
C
120 124Right-handed 310
Helix 38
38
C
127 132Right-handed 310
Helix 39
39
C
147 156Right-handed alpha
Helix 40
40
C
158 163Right-handed 310
Helix 41
41
C
173 177Right-handed 310
Helix 42
42
C
201 207Right-handed alpha
Helix 43
43
C
275 293Right-handed alpha
Helix 44
44
C
293 303Right-handed alpha
Helix 45
45
C
304 311Right-handed alpha
Helix 46
46
C
318 320Right-handed 310
Helix 47
47
C
321 342Right-handed alpha
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There are 15 sheets in PDB entry 3GOB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
108 111anti-parallel
Strand 3
A
102 105anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
42 46anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
74 75anti-parallel
Strand 4
A
81 83anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 144first strand
Strand 2
A
260 269anti-parallel
Strand 3
A
245 257anti-parallel
Strand 4
A
227 236anti-parallel
Strand 5
A
214 223anti-parallel
Strand 6
A
187 191anti-parallel
Strand 7
A
180 183anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 144first strand
Strand 2
A
260 269anti-parallel
Strand 3
A
245 257anti-parallel
Strand 4
A
227 236anti-parallel
Strand 5
A
214 223anti-parallel
Strand 6
A
193 194anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 111anti-parallel
Strand 3
B
102 105anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
42 46anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
65 67anti-parallel
Strand 3
B
74 75anti-parallel
Strand 4
B
81 83anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 144first strand
Strand 2
B
260 269anti-parallel
Strand 3
B
245 257anti-parallel
Strand 4
B
227 236anti-parallel
Strand 5
B
214 223anti-parallel
Strand 6
B
187 191anti-parallel
Strand 7
B
180 184anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 144first strand
Strand 2
B
260 269anti-parallel
Strand 3
B
245 257anti-parallel
Strand 4
B
227 236anti-parallel
Strand 5
B
214 223anti-parallel
Strand 6
B
193 197anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
108 111anti-parallel
Strand 3
C
102 105anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 27first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
42 46anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
65 67anti-parallel
Strand 3
C
74 75anti-parallel
Strand 4
C
81 83anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 144first strand
Strand 2
C
260 269anti-parallel
Strand 3
C
245 257anti-parallel
Strand 4
C
227 234anti-parallel
Strand 5
C
216 223anti-parallel
Strand 6
C
187 191anti-parallel
Strand 7
C
180 184anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 144first strand
Strand 2
C
260 269anti-parallel
Strand 3
C
245 257anti-parallel
Strand 4
C
227 234anti-parallel
Strand 5
C
216 223anti-parallel
Strand 6
C
193 194anti-parallel
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