Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOD entry

There are 4 chains in PDB entry 3GOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3VAL 322
B
 ASP 3THR 321
C
 LEU 13THR 321
D
 LEU 9THR 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3GOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
51 53Right-handed 310
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
113 124Right-handed alpha
Helix 5
5
A
125 151Right-handed alpha
Helix 6
6
A
151 157Right-handed alpha
Helix 7
7
A
162 179Right-handed alpha
Helix 8
8
A
182 205Right-handed alpha
Helix 9
9
A
220 244Right-handed alpha
Helix 10
10
A
260 268Right-handed alpha
Helix 11
11
A
274 286Right-handed alpha
Helix 12
12
A
288 303Right-handed alpha
Helix 13
13
A
304 320Right-handed alpha
Helix 14
14
B
5 16Right-handed alpha
Helix 15
15
B
51 53Right-handed 310
Helix 16
16
B
68 77Right-handed alpha
Helix 17
17
B
113 123Right-handed alpha
Helix 18
18
B
125 150Right-handed alpha
Helix 19
19
B
151 157Right-handed alpha
Helix 20
20
B
162 180Right-handed alpha
Helix 21
21
B
182 205Right-handed alpha
Helix 22
22
B
220 244Right-handed alpha
Helix 23
23
B
260 272Right-handed alpha
Helix 24
24
B
274 286Right-handed alpha
Helix 25
25
B
288 303Right-handed alpha
Helix 26
26
B
304 319Right-handed alpha
Helix 27
27
C
16 18Right-handed 310
Helix 28
28
C
68 77Right-handed alpha
Helix 29
29
C
114 124Right-handed alpha
Helix 30
30
C
125 149Right-handed alpha
Helix 31
31
C
152 157Right-handed alpha
Helix 32
32
C
162 180Right-handed alpha
Helix 33
33
C
182 205Right-handed alpha
Helix 34
34
C
220 245Right-handed alpha
Helix 35
35
C
260 268Right-handed alpha
Helix 36
36
C
270 286Right-handed alpha
Helix 37
37
C
288 303Right-handed alpha
Helix 38
38
C
304 319Right-handed alpha
Helix 39
39
D
46 50Right-handed 310
Helix 40
40
D
68 77Right-handed alpha
Helix 41
41
D
114 124Right-handed alpha
Helix 42
42
D
125 149Right-handed alpha
Helix 43
43
D
152 157Right-handed alpha
Helix 44
44
D
162 180Right-handed alpha
Helix 45
45
D
182 205Right-handed alpha
Helix 46
46
D
220 244Right-handed alpha
Helix 47
47
D
260 268Right-handed alpha
Helix 48
48
D
270 285Right-handed alpha
Helix 49
49
D
288 303Right-handed alpha
Helix 50
50
D
304 321Right-handed alpha
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There are 6 sheets in PDB entry 3GOD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
55 60parallel
Strand 3
A
80 84parallel
Strand 4
A
101 106anti-parallel
Strand 5
C
91 95anti-parallel
Strand 6
C
80 84anti-parallel
Strand 7
C
57 60parallel
Strand 8
C
20 23parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
26 31anti-parallel
Strand 4
A
64 67parallel
Strand 5
C
65 67anti-parallel
Strand 6
C
26 31parallel
Strand 7
C
34 39anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
97 99anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
55 60parallel
Strand 3
B
80 84parallel
Strand 4
B
101 106anti-parallel
Strand 5
D
91 95anti-parallel
Strand 6
D
80 84anti-parallel
Strand 7
D
57 60parallel
Strand 8
D
20 23parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
26 31anti-parallel
Strand 4
B
64 67parallel
Strand 5
D
64 67anti-parallel
Strand 6
D
26 31parallel
Strand 7
D
34 39anti-parallel
Strand 8
D
42 43anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
97 99anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il