Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOH entry

There is 1 chain in PDB entry 3GOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3GOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
77 81Right-handed 310
Helix 3
3
A
116 122Right-handed alpha
Helix 4
4
A
123 135Right-handed alpha
Helix 5
5
A
151 165Right-handed alpha
Helix 6
6
A
176 184Right-handed alpha
Helix 7
7
A
191 195Right-handed 310
Helix 8
8
A
214 216Right-handed 310
Helix 9
9
A
249 251Right-handed 310
Helix 10
10
A
252 257Right-handed alpha
Helix 11
11
A
258 278Right-handed alpha
Helix 12
12
A
293 305Right-handed alpha
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There are 4 sheets in PDB entry 3GOH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
15 22anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
84 88anti-parallel
Strand 5
A
108 110anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
308 311anti-parallel
Strand 4
A
287 290parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
167 171parallel
Strand 3
A
144 148parallel
Strand 4
A
199 204parallel
Strand 5
A
218 227parallel
Strand 6
A
244 248parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il