Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOR entry

There are 4 chains in PDB entry 3GOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLY 154
B
 SER -2GLY 154
C
 SER -2LYS 152
D
 SER 2LYS 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3GOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 24Right-handed alpha
Helix 2
2
A
25 30Right-handed 310
Helix 3
3
A
40 61Right-handed alpha
Helix 4
4
A
63 69Right-handed 310
Helix 5
5
A
77 95Right-handed alpha
Helix 6
6
A
99 102Right-handed 310
Helix 7
7
A
107 112Right-handed alpha
Helix 8
8
A
117 143Right-handed alpha
Helix 9
9
B
2 24Right-handed alpha
Helix 10
10
B
25 30Right-handed 310
Helix 11
11
B
40 61Right-handed alpha
Helix 12
12
B
63 69Right-handed 310
Helix 13
13
B
77 95Right-handed alpha
Helix 14
14
B
99 102Right-handed 310
Helix 15
15
B
107 112Right-handed alpha
Helix 16
16
B
117 142Right-handed alpha
Helix 17
17
C
2 24Right-handed alpha
Helix 18
18
C
25 30Right-handed 310
Helix 19
19
C
40 61Right-handed alpha
Helix 20
20
C
63 69Right-handed 310
Helix 21
21
C
77 95Right-handed alpha
Helix 22
22
C
99 102Right-handed 310
Helix 23
23
C
107 112Right-handed alpha
Helix 24
24
C
117 142Right-handed alpha
Helix 25
25
D
2 24Right-handed alpha
Helix 26
26
D
25 30Right-handed 310
Helix 27
27
D
40 61Right-handed alpha
Helix 28
28
D
63 69Right-handed 310
Helix 29
29
D
77 95Right-handed alpha
Helix 30
30
D
99 102Right-handed 310
Helix 31
31
D
107 112Right-handed alpha
Helix 32
32
D
117 142Right-handed alpha
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There are 4 sheets in PDB entry 3GOR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
114 116anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
114 116anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
C
114 116anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 106first strand
Strand 2
D
114 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il