Analysis of interatomic Contacts of Structural Units in PDB entry:
3GOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GOV entry

There are 2 chains in PDB entry 3GOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 298LYS 444
B
 ILE 449ASN 699
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3GOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
488 493Right-handed 310
Helix 2
2
B
504 508Right-handed 310
Helix 3
3
B
510 512Right-handed 310
Helix 4
4
B
610 618Right-handed alpha
Helix 5
5
B
687 696Right-handed alpha
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There are 7 sheets in PDB entry 3GOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
319 320anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
324 329anti-parallel
Strand 3
A
344 348anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
333 337anti-parallel
Strand 3
A
361 364anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
392 397anti-parallel
Strand 3
A
411 414anti-parallel
Strand 4
A
420 421anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
432 434anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 454first strand
Strand 2
B
602 609anti-parallel
Strand 3
B
629 632anti-parallel
Strand 4
B
679 683anti-parallel
Strand 5
B
660 668anti-parallel
Strand 6
B
649 653anti-parallel
Strand 7
B
583 588anti-parallel
Strand 8
B
602 609anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 533first strand
Strand 2
B
514 518anti-parallel
Strand 3
B
463 468anti-parallel
Strand 4
B
473 480anti-parallel
Strand 5
B
484 487anti-parallel
Strand 6
B
554 558anti-parallel
Strand 7
B
535 540anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il