Analysis of interatomic Contacts of Structural Units in PDB entry:
3GP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GP3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 3GP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 229
B
 MET 1GLY 229
C
 MET 1ASP 230
D
 MET 1ASP 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3GP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
29 46Right-handed alpha
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
83 86Right-handed 310
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
97 106Right-handed alpha
Helix 7
7
A
106 116Right-handed alpha
Helix 8
8
A
135 139Right-handed 310
Helix 9
9
A
142 146Right-handed 310
Helix 10
10
A
151 166Right-handed alpha
Helix 11
11
A
166 173Right-handed alpha
Helix 12
12
A
182 194Right-handed alpha
Helix 13
13
A
199 204Right-handed 310
Helix 14
14
B
12 17Right-handed alpha
Helix 15
15
B
29 46Right-handed alpha
Helix 16
16
B
58 73Right-handed alpha
Helix 17
17
B
83 86Right-handed 310
Helix 18
18
B
90 94Right-handed 310
Helix 19
19
B
97 106Right-handed alpha
Helix 20
20
B
106 116Right-handed alpha
Helix 21
21
B
135 139Right-handed 310
Helix 22
22
B
142 146Right-handed 310
Helix 23
23
B
151 166Right-handed alpha
Helix 24
24
B
166 173Right-handed alpha
Helix 25
25
B
182 194Right-handed alpha
Helix 26
26
B
199 204Right-handed 310
Helix 27
27
C
12 17Right-handed alpha
Helix 28
28
C
29 46Right-handed alpha
Helix 29
29
C
58 73Right-handed alpha
Helix 30
30
C
83 86Right-handed 310
Helix 31
31
C
90 94Right-handed 310
Helix 32
32
C
97 106Right-handed alpha
Helix 33
33
C
106 116Right-handed alpha
Helix 34
34
C
135 139Right-handed 310
Helix 35
35
C
142 146Right-handed 310
Helix 36
36
C
151 166Right-handed alpha
Helix 37
37
C
166 173Right-handed alpha
Helix 38
38
C
182 195Right-handed alpha
Helix 39
39
C
197 202Right-handed alpha
Helix 40
40
D
12 17Right-handed alpha
Helix 41
41
D
29 46Right-handed alpha
Helix 42
42
D
58 73Right-handed alpha
Helix 43
43
D
83 86Right-handed 310
Helix 44
44
D
90 94Right-handed 310
Helix 45
45
D
97 106Right-handed alpha
Helix 46
46
D
106 116Right-handed alpha
Helix 47
47
D
135 139Right-handed 310
Helix 48
48
D
142 146Right-handed 310
Helix 49
49
D
151 166Right-handed alpha
Helix 50
50
D
166 173Right-handed alpha
Helix 51
51
D
182 195Right-handed alpha
Helix 52
52
D
200 204Right-handed 310
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There are 4 sheets in PDB entry 3GP3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
52 55parallel
Strand 3
A
177 181parallel
Strand 4
A
2 8parallel
Strand 5
A
212 216anti-parallel
Strand 6
A
222 227anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
52 55parallel
Strand 3
B
177 181parallel
Strand 4
B
2 8parallel
Strand 5
B
212 216anti-parallel
Strand 6
B
222 227anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
52 55parallel
Strand 3
C
177 181parallel
Strand 4
C
2 8parallel
Strand 5
C
212 216anti-parallel
Strand 6
C
222 227anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 81first strand
Strand 2
D
52 55parallel
Strand 3
D
177 181parallel
Strand 4
D
2 8parallel
Strand 5
D
212 216anti-parallel
Strand 6
D
222 227anti-parallel
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