Analysis of interatomic Contacts of Structural Units in PDB entry:
3GP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GP5 entry

There are 2 chains in PDB entry 3GP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 248
B
 MET 1GLY 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3GP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
29 46Right-handed alpha
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
83 86Right-handed 310
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
97 106Right-handed alpha
Helix 7
7
A
106 116Right-handed alpha
Helix 8
8
A
135 139Right-handed 310
Helix 9
9
A
142 146Right-handed 310
Helix 10
10
A
151 166Right-handed alpha
Helix 11
11
A
166 173Right-handed alpha
Helix 12
12
A
182 195Right-handed alpha
Helix 13
13
A
199 204Right-handed 310
Helix 14
14
A
230 242Right-handed alpha
Helix 15
15
B
12 17Right-handed alpha
Helix 16
16
B
29 46Right-handed alpha
Helix 17
17
B
58 73Right-handed alpha
Helix 18
18
B
83 86Right-handed 310
Helix 19
19
B
90 94Right-handed 310
Helix 20
20
B
97 106Right-handed alpha
Helix 21
21
B
106 116Right-handed alpha
Helix 22
22
B
135 139Right-handed 310
Helix 23
23
B
142 146Right-handed 310
Helix 24
24
B
151 166Right-handed alpha
Helix 25
25
B
166 173Right-handed alpha
Helix 26
26
B
182 194Right-handed alpha
Helix 27
27
B
199 204Right-handed 310
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There are 2 sheets in PDB entry 3GP5. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
52 55parallel
Strand 3
A
177 181parallel
Strand 4
A
2 8parallel
Strand 5
A
212 216anti-parallel
Strand 6
A
222 227anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
52 55parallel
Strand 3
B
177 181parallel
Strand 4
B
2 8parallel
Strand 5
B
212 216anti-parallel
Strand 6
B
222 227anti-parallel
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