Analysis of interatomic Contacts of Structural Units in PDB entry:
3GP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GP6 entry

There is 1 chain in PDB entry 3GP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 3GP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 19Right-handed alpha
Helix 2
2
A
115 118Right-handed 310
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There is 1 sheet ( A) in PDB entry 3GP6.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 33first strand
Strand 2
A
52 60anti-parallel
Strand 3
A
66 75anti-parallel
Strand 4
A
81 93anti-parallel
Strand 5
A
101 113anti-parallel
Strand 6
A
121 133anti-parallel
Strand 7
A
136 143anti-parallel
Strand 8
A
152 161anti-parallel
Strand 9
A
22 33anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il