Analysis of interatomic Contacts of Structural Units in PDB entry:
3GP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GP7 entry

There are 2 chains in PDB entry 3GP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 238
B
 SER 2LYS 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
21 26Right-handed alpha
Helix 3
3
A
27 29Right-handed 310
Helix 4
4
A
70 78Right-handed alpha
Helix 5
5
A
157 173Right-handed alpha
Helix 6
6
A
209 215Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
B
13 17Right-handed 310
Helix 9
9
B
21 26Right-handed alpha
Helix 10
10
B
27 29Right-handed 310
Helix 11
11
B
70 78Right-handed alpha
Helix 12
12
B
157 173Right-handed alpha
Helix 13
13
B
209 215Right-handed alpha
Helix 14
14
B
216 220Right-handed 310
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There are 8 sheets in PDB entry 3GP7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
118 120anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
111 115parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 152first strand
Strand 2
A
125 138anti-parallel
Strand 3
A
228 236parallel
Strand 4
A
182 191anti-parallel
Strand 5
A
194 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
222 224anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
81 86anti-parallel
Strand 3
B
118 120anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
111 115parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 152first strand
Strand 2
B
125 138anti-parallel
Strand 3
B
228 236parallel
Strand 4
B
182 191anti-parallel
Strand 5
B
194 199anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il