Analysis of interatomic Contacts of Structural Units in PDB entry:
3GP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GP8 entry

There are 2 chains in PDB entry 3GP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 153LEU 716
X
 T 1 T 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3GP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
156 166Right-handed alpha
Helix 2
2
A
169 181Right-handed alpha
Helix 3
3
A
183 191Right-handed alpha
Helix 4
4
A
192 198Right-handed 310
Helix 5
5
A
202 213Right-handed alpha
Helix 6
6
A
219 239Right-handed alpha
Helix 7
7
A
245 257Right-handed alpha
Helix 8
8
A
259 273Right-handed alpha
Helix 9
9
A
298 318Right-handed alpha
Helix 10
10
A
332 337Right-handed 310
Helix 11
11
A
340 353Right-handed alpha
Helix 12
12
A
365 380Right-handed alpha
Helix 13
13
A
390 402Right-handed alpha
Helix 14
14
A
408 412Right-handed alpha
Helix 15
15
A
436 440Right-handed 310
Helix 16
16
A
441 451Right-handed alpha
Helix 17
17
A
474 483Right-handed alpha
Helix 18
18
A
492 497Right-handed alpha
Helix 19
19
A
498 508Right-handed alpha
Helix 20
20
A
529 542Right-handed alpha
Helix 21
21
A
559 572Right-handed alpha
Helix 22
22
A
632 635Right-handed 310
Helix 23
23
A
645 649Right-handed alpha
Helix 24
24
A
661 668Right-handed 310
Helix 25
25
A
669 679Right-handed alpha
Helix 26
26
A
689 699Right-handed alpha
Helix 27
27
A
707 716Right-handed alpha
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There are 7 sheets in PDB entry 3GP8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
277 279anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
384 388parallel
Strand 3
A
431 434parallel
Strand 4
A
457 462parallel
Strand 5
A
355 360parallel
Strand 6
A
485 488parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
418 419anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 524first strand
Strand 2
A
680 688parallel
Strand 3
A
653 660parallel
Strand 4
A
548 551parallel
Strand 5
A
642 644parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
584 585anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
637 639anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 614first strand
Strand 2
A
617 620anti-parallel
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