Analysis of interatomic Contacts of Structural Units in PDB entry:
3GPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GPH entry

There are 2 chains in PDB entry 3GPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 31SER 493
B
 LYS 31SER 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3GPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 48Right-handed 310
Helix 2
2
A
52 65Right-handed alpha
Helix 3
3
A
82 92Right-handed alpha
Helix 4
4
A
103 107Right-handed 310
Helix 5
5
A
121 137Right-handed alpha
Helix 6
6
A
141 161Right-handed alpha
Helix 7
7
A
173 186Right-handed alpha
Helix 8
8
A
193 210Right-handed alpha
Helix 9
9
A
212 221Right-handed alpha
Helix 10
10
A
221 226Right-handed alpha
Helix 11
11
A
231 256Right-handed alpha
Helix 12
12
A
264 275Right-handed alpha
Helix 13
13
A
285 318Right-handed alpha
Helix 14
14
A
318 333Right-handed alpha
Helix 15
15
A
340 346Right-handed 310
Helix 16
16
A
347 362Right-handed alpha
Helix 17
17
A
393 398Right-handed alpha
Helix 18
18
A
410 415Right-handed 310
Helix 19
19
A
439 457Right-handed alpha
Helix 20
20
A
465 469Right-handed 310
Helix 21
21
B
44 48Right-handed 310
Helix 22
22
B
52 65Right-handed alpha
Helix 23
23
B
82 91Right-handed alpha
Helix 24
24
B
103 107Right-handed 310
Helix 25
25
B
121 136Right-handed alpha
Helix 26
26
B
140 161Right-handed alpha
Helix 27
27
B
168 173Right-handed alpha
Helix 28
28
B
173 186Right-handed alpha
Helix 29
29
B
193 210Right-handed alpha
Helix 30
30
B
212 221Right-handed alpha
Helix 31
31
B
221 226Right-handed alpha
Helix 32
32
B
230 256Right-handed alpha
Helix 33
33
B
264 275Right-handed alpha
Helix 34
34
B
285 318Right-handed alpha
Helix 35
35
B
318 333Right-handed alpha
Helix 36
36
B
340 346Right-handed 310
Helix 37
37
B
347 362Right-handed alpha
Helix 38
38
B
393 398Right-handed alpha
Helix 39
39
B
410 415Right-handed 310
Helix 40
40
B
439 457Right-handed alpha
Helix 41
41
B
465 469Right-handed 310
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There are 8 sheets in PDB entry 3GPH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
388 391parallel
Strand 4
A
370 371anti-parallel
Strand 5
A
99 100anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
381 383anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 462first strand
Strand 2
A
487 491anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
480 481anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
75 80anti-parallel
Strand 3
B
388 391parallel
Strand 4
B
370 371anti-parallel
Strand 5
B
99 100anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 378first strand
Strand 2
B
381 383anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 462first strand
Strand 2
B
487 491anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
475 476first strand
Strand 2
B
480 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il