Analysis of interatomic Contacts of Structural Units in PDB entry:
3GPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GPI entry

There is 1 chain in PDB entry 3GPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
56 61Right-handed 310
Helix 4
4
A
68 75Right-handed alpha
Helix 5
5
A
83 94Right-handed alpha
Helix 6
6
A
109 111Right-handed 310
Helix 7
7
A
129 142Right-handed alpha
Helix 8
8
A
143 145Right-handed 310
Helix 9
9
A
161 167Right-handed alpha
Helix 10
10
A
168 173Right-handed 310
Helix 11
11
A
185 200Right-handed alpha
Helix 12
12
A
218 229Right-handed alpha
Helix 13
13
A
249 255Right-handed alpha
Helix 14
14
A
263 276Right-handed alpha
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There are 4 sheets in PDB entry 3GPI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
27 31parallel
Strand 3
A
4 7parallel
Strand 4
A
64 67parallel
Strand 5
A
101 107parallel
Strand 6
A
147 152parallel
Strand 7
A
207 210parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
246 247parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
182 184parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
216 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il