Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GQ2 entry

There are 2 chains in PDB entry 3GQ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 17GLU 640
B
 HIS 17LYS 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 83 helices in PDB entry 3GQ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
35 49Right-handed alpha
Helix 3
3
A
53 70Right-handed alpha
Helix 4
4
A
75 91Right-handed alpha
Helix 5
5
A
108 119Right-handed alpha
Helix 6
6
A
120 126Right-handed alpha
Helix 7
7
A
126 131Right-handed alpha
Helix 8
8
A
135 153Right-handed alpha
Helix 9
9
A
153 164Right-handed alpha
Helix 10
10
A
166 172Right-handed alpha
Helix 11
11
A
173 177Right-handed 310
Helix 12
12
A
179 195Right-handed alpha
Helix 13
13
A
197 207Right-handed alpha
Helix 14
14
A
208 220Right-handed alpha
Helix 15
15
A
221 224Right-handed 310
Helix 16
16
A
225 241Right-handed alpha
Helix 17
17
A
243 253Right-handed alpha
Helix 18
18
A
255 264Right-handed 310
Helix 19
19
A
273 292Right-handed alpha
Helix 20
20
A
296 310Right-handed alpha
Helix 21
21
A
311 322Right-handed alpha
Helix 22
22
A
326 342Right-handed alpha
Helix 23
23
A
344 354Right-handed alpha
Helix 24
24
A
363 373Right-handed alpha
Helix 25
25
A
378 394Right-handed alpha
Helix 26
26
A
396 408Right-handed alpha
Helix 27
27
A
420 431Right-handed alpha
Helix 28
28
A
433 449Right-handed alpha
Helix 29
29
A
451 459Right-handed alpha
Helix 30
30
A
474 483Right-handed alpha
Helix 31
31
A
487 503Right-handed alpha
Helix 32
32
A
505 515Right-handed alpha
Helix 33
33
A
517 528Right-handed alpha
Helix 34
34
A
531 533Right-handed 310
Helix 35
35
A
534 551Right-handed alpha
Helix 36
36
A
556 559Right-handed 310
Helix 37
37
A
560 572Right-handed alpha
Helix 38
38
A
573 587Right-handed alpha
Helix 39
39
A
589 594Right-handed alpha
Helix 40
40
A
603 607Right-handed 310
Helix 41
41
A
610 629Right-handed alpha
Helix 42
42
A
632 639Right-handed alpha
Helix 43
43
B
20 33Right-handed alpha
Helix 44
44
B
35 53Right-handed alpha
Helix 45
45
B
53 72Right-handed alpha
Helix 46
46
B
75 91Right-handed alpha
Helix 47
47
B
108 119Right-handed alpha
Helix 48
48
B
121 132Right-handed alpha
Helix 49
49
B
135 153Right-handed alpha
Helix 50
50
B
153 164Right-handed alpha
Helix 51
51
B
166 173Right-handed alpha
Helix 52
52
B
174 176Right-handed 310
Helix 53
53
B
179 195Right-handed alpha
Helix 54
54
B
197 207Right-handed alpha
Helix 55
55
B
208 220Right-handed alpha
Helix 56
56
B
221 224Right-handed 310
Helix 57
57
B
225 241Right-handed alpha
Helix 58
58
B
243 253Right-handed alpha
Helix 59
59
B
254 264Right-handed 310
Helix 60
60
B
273 291Right-handed alpha
Helix 61
61
B
296 310Right-handed alpha
Helix 62
62
B
311 320Right-handed alpha
Helix 63
63
B
326 342Right-handed alpha
Helix 64
64
B
344 354Right-handed alpha
Helix 65
65
B
363 373Right-handed alpha
Helix 66
66
B
378 394Right-handed alpha
Helix 67
67
B
396 406Right-handed alpha
Helix 68
68
B
420 430Right-handed alpha
Helix 69
69
B
433 449Right-handed alpha
Helix 70
70
B
451 459Right-handed alpha
Helix 71
71
B
474 482Right-handed alpha
Helix 72
72
B
487 503Right-handed alpha
Helix 73
73
B
505 515Right-handed alpha
Helix 74
74
B
517 528Right-handed alpha
Helix 75
75
B
531 533Right-handed 310
Helix 76
76
B
534 551Right-handed alpha
Helix 77
77
B
561 572Right-handed alpha
Helix 78
78
B
573 582Right-handed alpha
Helix 79
79
B
582 587Right-handed alpha
Helix 80
80
B
589 594Right-handed alpha
Helix 81
81
B
603 607Right-handed 310
Helix 82
82
B
610 629Right-handed alpha
Helix 83
83
B
631 639Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3GQ2. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
472 473anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 463first strand
Strand 2
B
472 473anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il