Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GQC entry

There are 12 chains in PDB entry 3GQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 344ASN 828
B
 SER 344ASN 828
C
 SER 344THR 827
D
 CYS 346THR 827
E
 A 1 A 11
F
 T 1 T 16
G
 A 1 A 11
H
 T 1 T 16
I
 A 1 A 11
J
 T 1 T 16
K
 A 1 A 11
L
 T 1 T 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 3GQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
344 356Right-handed alpha
Helix 2
2
A
356 376Right-handed alpha
Helix 3
3
A
383 388Right-handed alpha
Helix 4
4
A
426 433Right-handed alpha
Helix 5
5
A
462 472Right-handed alpha
Helix 6
6
A
499 503Right-handed 310
Helix 7
7
A
512 517Right-handed alpha
Helix 8
8
A
525 533Right-handed alpha
Helix 9
9
A
542 559Right-handed alpha
Helix 10
10
A
576 584Right-handed alpha
Helix 11
11
A
586 603Right-handed alpha
Helix 12
12
A
613 625Right-handed alpha
Helix 13
13
A
633 635Right-handed 310
Helix 14
14
A
636 644Right-handed alpha
Helix 15
15
A
645 649Right-handed 310
Helix 16
16
A
653 663Right-handed alpha
Helix 17
17
A
667 672Right-handed alpha
Helix 18
18
A
675 684Right-handed alpha
Helix 19
19
A
684 695Right-handed alpha
Helix 20
20
A
724 746Right-handed alpha
Helix 21
21
A
792 806Right-handed alpha
Helix 22
22
A
810 812Right-handed 310
Helix 23
23
B
344 356Right-handed alpha
Helix 24
24
B
356 377Right-handed alpha
Helix 25
25
B
383 390Right-handed alpha
Helix 26
26
B
426 433Right-handed alpha
Helix 27
27
B
462 471Right-handed alpha
Helix 28
28
B
499 503Right-handed 310
Helix 29
29
B
512 517Right-handed alpha
Helix 30
30
B
525 533Right-handed alpha
Helix 31
31
B
542 559Right-handed alpha
Helix 32
32
B
576 582Right-handed alpha
Helix 33
33
B
586 603Right-handed alpha
Helix 34
34
B
613 625Right-handed alpha
Helix 35
35
B
633 635Right-handed 310
Helix 36
36
B
636 644Right-handed alpha
Helix 37
37
B
645 649Right-handed 310
Helix 38
38
B
653 662Right-handed alpha
Helix 39
39
B
667 672Right-handed alpha
Helix 40
40
B
675 684Right-handed alpha
Helix 41
41
B
684 695Right-handed alpha
Helix 42
42
B
724 747Right-handed alpha
Helix 43
43
B
792 806Right-handed alpha
Helix 44
44
B
810 812Right-handed 310
Helix 45
45
C
344 356Right-handed alpha
Helix 46
46
C
356 377Right-handed alpha
Helix 47
47
C
426 433Right-handed alpha
Helix 48
48
C
436 440Right-handed 310
Helix 49
49
C
462 472Right-handed alpha
Helix 50
50
C
512 518Right-handed alpha
Helix 51
51
C
525 533Right-handed alpha
Helix 52
52
C
542 559Right-handed alpha
Helix 53
53
C
576 582Right-handed alpha
Helix 54
54
C
586 603Right-handed alpha
Helix 55
55
C
613 625Right-handed alpha
Helix 56
56
C
636 643Right-handed alpha
Helix 57
57
C
645 649Right-handed 310
Helix 58
58
C
653 662Right-handed alpha
Helix 59
59
C
667 672Right-handed alpha
Helix 60
60
C
675 684Right-handed alpha
Helix 61
61
C
684 695Right-handed alpha
Helix 62
62
C
724 746Right-handed alpha
Helix 63
63
C
792 806Right-handed alpha
Helix 64
64
C
810 812Right-handed 310
Helix 65
65
D
346 356Right-handed alpha
Helix 66
66
D
356 377Right-handed alpha
Helix 67
67
D
383 389Right-handed alpha
Helix 68
68
D
426 433Right-handed alpha
Helix 69
69
D
462 471Right-handed alpha
Helix 70
70
D
496 501Right-handed alpha
Helix 71
71
D
512 517Right-handed alpha
Helix 72
72
D
525 533Right-handed alpha
Helix 73
73
D
542 558Right-handed alpha
Helix 74
74
D
576 584Right-handed alpha
Helix 75
75
D
586 603Right-handed alpha
Helix 76
76
D
613 625Right-handed alpha
Helix 77
77
D
633 643Right-handed alpha
Helix 78
78
D
645 649Right-handed 310
Helix 79
79
D
653 662Right-handed alpha
Helix 80
80
D
667 672Right-handed alpha
Helix 81
81
D
675 684Right-handed alpha
Helix 82
82
D
684 695Right-handed alpha
Helix 83
83
D
724 747Right-handed alpha
Helix 84
84
D
792 806Right-handed alpha
Helix 85
85
D
810 812Right-handed 310
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There are 12 sheets in PDB entry 3GQC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 568first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
419 424anti-parallel
Strand 4
A
606 611anti-parallel
Strand 5
A
629 631parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
444 446anti-parallel
Strand 3
A
537 539parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 716first strand
Strand 2
A
814 826anti-parallel
Strand 3
A
748 760anti-parallel
Strand 4
A
777 790anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 568first strand
Strand 2
B
571 575anti-parallel
Strand 3
B
419 424anti-parallel
Strand 4
B
606 611anti-parallel
Strand 5
B
629 631parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 511first strand
Strand 2
B
444 446anti-parallel
Strand 3
B
537 539parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 716first strand
Strand 2
B
814 826anti-parallel
Strand 3
B
748 760anti-parallel
Strand 4
B
777 790anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
564 568first strand
Strand 2
C
571 575anti-parallel
Strand 3
C
419 424anti-parallel
Strand 4
C
606 611anti-parallel
Strand 5
C
629 631parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
510 511first strand
Strand 2
C
444 446anti-parallel
Strand 3
C
537 539parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
712 716first strand
Strand 2
C
814 826anti-parallel
Strand 3
C
748 760anti-parallel
Strand 4
C
777 790anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
564 568first strand
Strand 2
D
571 575anti-parallel
Strand 3
D
419 424anti-parallel
Strand 4
D
606 611anti-parallel
Strand 5
D
629 631parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
510 511first strand
Strand 2
D
444 446anti-parallel
Strand 3
D
537 539parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
712 716first strand
Strand 2
D
814 826anti-parallel
Strand 3
D
748 760anti-parallel
Strand 4
D
777 790anti-parallel
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